Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00216 ATGAGTACAGAAGCTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAAGCAATAGAAAAGGCCCTCAAAAAGTTATCAGTAAAAGCTGGAGATCAGCTTATAATTGTTGCCATACTTAATTGGTTTAGCAGTCCTAGTATGTTTTCTTTCTTTGGAAGAAAGAGTTTGGGGTACATGGTCTCAGTTGATTCAAGTTATTTTGTTTCATCCAACAAGAAAATCATTTCAGAAAAGTTTACCAAGAGAAAGAATGACTATCATATGAACCGATACATCAACAAACTCTCTGAGTACTGTCAAATGAATGAGATTGAATTCCAACTAGAAATGCATGTAGGACCAGCTTCCCAGGTTATTTCTGATGCTGCAGCAAAATTTCAGCCTACAACTTTGATACTTGATAAACAGATCCACAGAAACATGAAGAATTTCATGGACAGGATCCCTTGTGGTATGTATAGGATAACAAGTGATAACTCCATTGAAAAGTTGAAAGATCCAAAATCAACAGCTACTAAACTTTCTGAAAGGCAAGAAAATATAAGCTATTCAGAAATGATACCAGGAAGTGAAGATGATGGAGTTTCTCTTCAGATGTCCAAGTCTTCATCTACTGATCTTTTCACGTCAACCGGAGTTTCAAGTCAGTGTAGTACTGATGCCTCGACTTCTAGCATTGCAAGTTCACAATATGTCCTTCAAAAATACCAAATTGAGGAGTTTTTTCCTGAACAAGGAAAACAAGGGAGGCAATCACTATTTCATATTTCTGGAATTCAAGAAACAAGCCAAAAAGAAGTTATTCATATGGAGGAAGATTTTACGAATCCAGTTTGTTCTGTGTGTAATAATAGAAGACTGAAAATTGGATCGAAAAGAGACTTCAGTTACTTAGAGCTCTACACTGCTACACAAGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTTTACAAAGGACAACTTGATGGAATGCCGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTAGGTCTGAAGTCAATGTACTTCGAAGAGCGAGACATGAGAATGTGGTTATGCTTCTAGGTTCATGTTCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGCTCACTTGATCAACATCTATCAGAACACTCTCGATTACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCAGCCAAAGGCTTACTATACTTGCACAAAAATAGCATAATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCTCCAACCATTGATAGGAGATTTCGGACTTGCAAGAACTCACAACAAAGATTTGACACACTCGACAGAAGTTGTTGGTACATGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTCGTTCTACTACAACTTATCACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGCCTCGTTGGATGGGCAAGGCCACTTTTAAAAGAGAGAAATTATCCAGATCTAATTGATGAGAGGATCATTGATACTCATGATTACCATCAATTATTTTGGATGATTCGACTAGCTGAGAAATGTTTAAGCAGGGACCCTAAGAAAAGACTAACTATGGTTGAGGTTGTTAATGCTTTGACCGACATTTCCGAAGGCAACACATGTGACATTGGAACAGGCGATTGCACCCCTGCAATGTCAGATTCATCCTATAGTGAATCAGAATTTGATGAAAATGAAGATGAGAATGGACGTTTCGAGGATGAAGGTGAGTTACTAAGCACCATCTCAGAATCCACAGAAGGCAGTGATTACACTATTCAGATGAGGCATATGAGTGTGAGGCAGCCACCATCTCCTCCAATTAAAAACTTCTATTCAAGTGGCTCGAGTTCATTTCAGTTTTCTGATGAATCAAATAGTGACTATGAAGCACATAATGAAAAGAGTACAGAAATACCAATCTCCAAAGTTGGTTTAATCAACTCTTAG 2076 0.3796 MSTEAQTVVVIQDASRDVGLKAIEKALKKLSVKAGDQLIIVAILNWFSSPSMFSFFGRKSLGYMVSVDSSYFVSSNKKIISEKFTKRKNDYHMNRYINKLSEYCQMNEIEFQLEMHVGPASQVISDAAAKFQPTTLILDKQIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSTATKLSERQENISYSEMIPGSEDDGVSLQMSKSSSTDLFTSTGVSSQCSTDASTSSIASSQYVLQKYQIEEFFPEQGKQGRQSLFHISGIQETSQKEVIHMEEDFTNPVCSVCNNRRLKIGSKRDFSYLELYTATQGFSAKNFLSEGGFGSVYKGQLDGMPIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLTWEDRIKVAIGAAKGLLYLHKNSIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSRDPKKRLTMVEVVNALTDISEGNTCDIGTGDCTPAMSDSSYSESEFDENEDENGRFEDEGELLSTISESTEGSDYTIQMRHMSVRQPPSPPIKNFYSSGSSSFQFSDESNSDYEAHNEKSTEIPISKVGLINS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00216 691 CDD STKc_IRAK 318 577 - -
Trre5g00216 691 Gene3D Phosphorylase Kinase; domain 1 284 386 - -
Trre5g00216 691 PANTHER OS01G0253100 PROTEIN 198 578 - -
Trre5g00216 691 MobiDBLite consensus disorder prediction 642 678 - -
Trre5g00216 691 Gene3D Transferase(Phosphotransferase) domain 1 387 587 - -
Trre5g00216 691 FunFam Proline-rich receptor-like protein kinase PERK8 274 386 - -
Trre5g00216 691 MobiDBLite consensus disorder prediction 594 614 - -
Trre5g00216 691 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 387 589 - -
Trre5g00216 691 MobiDBLite consensus disorder prediction 648 668 - -
Trre5g00216 691 ProSitePatterns Tyrosine protein kinases specific active-site signature. 428 440 IPR008266 GO:0004672|GO:0006468
Trre5g00216 691 SMART tyrkin_6 312 574 IPR020635 GO:0004713|GO:0006468
Trre5g00216 691 SUPERFAMILY Protein kinase-like (PK-like) 295 574 IPR011009 -
Trre5g00216 691 Pfam Protein tyrosine and serine/threonine kinase 315 574 IPR001245 GO:0004672|GO:0006468
Trre5g00216 691 ProSiteProfiles Protein kinase domain profile. 312 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00216 Trre-Chr5 1311549 1316251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00216 300 589 Trihelix Transcription Factor Family AT1G70460 47.508 2.29e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre5g00216 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00216 - - gsj:114417376 881.322