Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00215 ATGAGTACAGAAGCTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAAGCAATAGAAAAGGCCCTCAAAAAGTTATCAGTAAAAGCTGGAGATCAGCTTATAATTGTTGCCATACTTAATTGGTTTAGCAGTCCTATGGGGTACATGGTCTCAGTTGATTCAAGTTATTTTGTTTCATCCAACAAGAAAATCATTTCAGAAAAGTTTACCAAGAGAAAGAATGACTATCATATGAACCGATACATCAACAAACTCTCTGAGTACTGTCAAATGAATGAGATTGAATTCCAACTAGAAATGCATGTAGGACCAGCTTCCCAGGTTATTTCTGATGCTGCAGCAAAATTTCAGCCTACAACTTTGATACTTGATAAACAGATCCACAGAAACATGAAGAATTTCATGGACAGGATCCCTTGTGGTATGTATAGGATAACAAGTGATAACTCCATTGAAAAGTTGAAAGATCCAAAATCAACAGCTACTAAACTTTCTGAAAGGCAAGAAAATATAAGCTATTCAGAAATGATACCAGGAAGTGAAGATGATGGAGTTTCTCTTCAGATGTCCAAGTCTTCATCTACTGATCTTTTCACGTCAACCGGAGTTTCAAGTCAGTGTAGTACTGATGCCTCGACTTCTAGCATTGCAAGTTCACAATATGTCCTTCAAAAATACCAAATTGAGGAGTTTTTTCCTGAACAAGGAAAACAAGGGAGGCAATCACTATTTCATATTTCTGGAATTCAAGAAACAAGCCAAAAAGAAGTTATTCATATGGAGGAAGATTTTACGAATCCAGTTTGTTCTGTGTGTAATAATAGAAGACTGAAAATTGGATCGAAAAGAGACTTCAGTTACTTAGAGCTCTACACTGCTACACAAGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTTTACAAAGGACAACTTGATGGAATGCCGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTAGGTCTGAAGTCAATGTACTTCGAAGAGCGAGACATGAGAATGTGGTTATGCTTCTAGGTTCATGTTCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGCTCACTTGATCAACATCTATCAGAACACTCTCGATTACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCAGCCAAAGGCTTACTATACTTGCACAAAAATAGCATAATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCTCCAACCATTGATAGGAGATTTCGGACTTGCAAGAACTCACAACAAAGATTTGACACACTCGACAGAAGTTGTTGGTACATGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTCGTTCTACTACAACTTATCACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGCCTCGTTGGATGGGCAAGGCCACTTTTAAAAGAGAGAAATTATCCAGATCTAATTGATGAGAGGATCATTGATACTCATGATTACCATCAATTATTTTGGATGATTCGACTAGCTGAGAAATGTTTAAGCAGGGACCCTAAGAAAAGACTAACTATGGTTGAGGTTGTTAATGCTTTGACCGACATTTCCGAAGGCAACACATGTGACATTGGAACAGGCGATTGCACCCCTGCAATGTCAGATTCATCCTATAGTGAATCAGAATTTGATGAAAATGAAGATGAGAATGGACGTTTCGAGGATGAAGGTGAGTTACTAAGCACCATCTCAGAATCCACAGAAGGCAGTGATTACACTATTCAGATGAGGCATATGAGTGTGAGGCAGCCACCATCTCCTCCAATTAAAAACTTCTATTCAAGTGGCTCGAGTTCATTTCAGTTTTCTGATGAATCAAATAGTGACTATGAAGCACATAATGAAAAGAGTACAGAAATACCAATCTCCAAAGTTGGTTTAATCAACTCTTAG 2046 0.3807 MSTEAQTVVVIQDASRDVGLKAIEKALKKLSVKAGDQLIIVAILNWFSSPMGYMVSVDSSYFVSSNKKIISEKFTKRKNDYHMNRYINKLSEYCQMNEIEFQLEMHVGPASQVISDAAAKFQPTTLILDKQIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSTATKLSERQENISYSEMIPGSEDDGVSLQMSKSSSTDLFTSTGVSSQCSTDASTSSIASSQYVLQKYQIEEFFPEQGKQGRQSLFHISGIQETSQKEVIHMEEDFTNPVCSVCNNRRLKIGSKRDFSYLELYTATQGFSAKNFLSEGGFGSVYKGQLDGMPIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLTWEDRIKVAIGAAKGLLYLHKNSIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSRDPKKRLTMVEVVNALTDISEGNTCDIGTGDCTPAMSDSSYSESEFDENEDENGRFEDEGELLSTISESTEGSDYTIQMRHMSVRQPPSPPIKNFYSSGSSSFQFSDESNSDYEAHNEKSTEIPISKVGLINS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00215 681 FunFam Proline-rich receptor-like protein kinase PERK8 264 376 - -
Trre5g00215 681 ProSiteProfiles Protein kinase domain profile. 302 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00215 681 SUPERFAMILY Protein kinase-like (PK-like) 285 564 IPR011009 -
Trre5g00215 681 SMART tyrkin_6 302 564 IPR020635 GO:0004713|GO:0006468
Trre5g00215 681 MobiDBLite consensus disorder prediction 638 658 - -
Trre5g00215 681 CDD STKc_IRAK 308 567 - -
Trre5g00215 681 ProSitePatterns Tyrosine protein kinases specific active-site signature. 418 430 IPR008266 GO:0004672|GO:0006468
Trre5g00215 681 MobiDBLite consensus disorder prediction 584 604 - -
Trre5g00215 681 Pfam Protein tyrosine and serine/threonine kinase 305 564 IPR001245 GO:0004672|GO:0006468
Trre5g00215 681 MobiDBLite consensus disorder prediction 632 668 - -
Trre5g00215 681 Gene3D Transferase(Phosphotransferase) domain 1 377 577 - -
Trre5g00215 681 PANTHER OS01G0253100 PROTEIN 188 568 - -
Trre5g00215 681 Gene3D Phosphorylase Kinase; domain 1 274 376 - -
Trre5g00215 681 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 377 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00215 Trre-Chr5 1311549 1316251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00215 290 579 Trihelix Transcription Factor Family AT1G70460 47.508 1.41e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre5g00215 PK_Tyr_Ser-Thr 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00215 - - gmx:100794450 876.7