Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00214 ATGTCTAACTCTCATCATCAAATAGTTAAACAACATTCTGAGAATTCTTTTTGCTCAGTTTGTTACAACATAAGACCAAAACTTGATTGGACAAAAAGAGATTTCACATATGCTGAGTTGCATACAGCAACACATGGTTTTTCCAATAAGAATTTTCTATCAGAAGGTGGTTTTGGTTCTGTCTATAAAGGAGAGATTCATGGACAAAAGATTGCTGTTAAAAAATGTATTCATGCAAGTCACAAACAAGAGAAGGAGTTCAAATCTGAAGTTGATGCACTAAGCAAAGCAAGACATGAGAATGTTGTTATGTTACTTGGATCATGCTCAGAAGGAAAAAATAGGATTCTTGTTTATGAATTTGTTTGCAATGGTTCACTAGACCAACATTTATCAAAACATTCTCGAAAACCTCTTTGTTGGAAAGATAGATTGAAAGTAGCTAATGGAGCTGCCAAAGGACTTCTATATCTGCATCAGAACAACATCATACATAGAGATATAAAACCAAACAACATTCTTCTTACACATGATTGTGAAGTTTTGCTAGGTGATTTTGGTTTGGCCAAAATTGCAAGTGAAGAATTCTCATGCTCAATAGAATGTCCTGGAAATTTGGCATATTGGGCACCAGAATATGCAGCATATGGTAAAGTCTCAAATAAGACAGATGTGTATTCTTTTGGTGTGGTTCTTGTTGAGCTTATAACAGGAATGAGGACTACAGACAGAAAACTTGGTGGAAAGAGTCTAGTGGGATGGGCTAGGCCACTACTAATAGAAGGTAATTGTCAAAAATTTGTTGATGAAAGGATAATGGATTCCCATGACTGTCACCAAATCCATTGGATGAGTCGTCTAGCTGGAAATTGTTTAAATAAAGATCCTCATAAACGATTGGATATGAGTACAGTGGTCAAAGCCTTGACACATATAGAGGAAGGTTGCAGCTGCTGCATTTTGGGAAAAGACAGTAGTACCCTTACCATGTCAGACTATTCTAAATCAAAAGATGATATTCAAGACTCTTCAGAATCATATGGCCAAAATGGAAATATTGGAAGTAGTTCCATTACTGAAAAATGCAAAAACCTCAAATTATAA 1104 0.3551 MSNSHHQIVKQHSENSFCSVCYNIRPKLDWTKRDFTYAELHTATHGFSNKNFLSEGGFGSVYKGEIHGQKIAVKKCIHASHKQEKEFKSEVDALSKARHENVVMLLGSCSEGKNRILVYEFVCNGSLDQHLSKHSRKPLCWKDRLKVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDCEVLLGDFGLAKIASEEFSCSIECPGNLAYWAPEYAAYGKVSNKTDVYSFGVVLVELITGMRTTDRKLGGKSLVGWARPLLIEGNCQKFVDERIMDSHDCHQIHWMSRLAGNCLNKDPHKRLDMSTVVKALTHIEEGCSCCILGKDSSTLTMSDYSKSKDDIQDSSESYGQNGNIGSSSITEKCKNLKL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00214 367 MobiDBLite consensus disorder prediction 333 353 - -
Trre5g00214 367 FunFam Proline-rich receptor-like protein kinase PERK8 8 121 - -
Trre5g00214 367 PIRSF ILK 3 326 - -
Trre5g00214 367 Pfam Protein tyrosine and serine/threonine kinase 50 309 IPR001245 GO:0004672|GO:0006468
Trre5g00214 367 Gene3D Transferase(Phosphotransferase) domain 1 122 322 - -
Trre5g00214 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trre5g00214 367 SUPERFAMILY Protein kinase-like (PK-like) 31 312 IPR011009 -
Trre5g00214 367 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Trre5g00214 367 SMART serkin_6 47 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00214 367 PANTHER OS01G0253100 PROTEIN 19 313 - -
Trre5g00214 367 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00214 367 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 122 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00214 Trre-Chr5 1306832 1309668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00214 35 316 Trihelix Transcription Factor Family AT5G38560 44.407 1.62e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre5g00214 PK_Tyr_Ser-Thr 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00214 - - cam:101502867 628.632