Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00213 ATGAAGCGAGTTAAAAATGAGAATGAAGATGATGTGCTCTGCAATGATCAAATACAGCCACGGTTGAATGGCGAAGGTAACGGAGGAAGTGTTGGTGGTGGAGTTGTTCTCAAAAAAGGTCCATGGACATCTGCGGAAGATGCTATTTTGATTGATTATGTCAGGAAGCATGGAGAGGGGAACTGGAACGCTGTTCAGAAGCATTCAGGCCTGTCTCGATGTGGAAAAAGTTGCCGATTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTCCTGAGGAGGAGCAATTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCAGCACACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTTCTCGGGCTGGCTTGCCACTTTATCCTCCAGATGTGTCTTTGCGAAAAATTCAAGGGAATCAACGTGGCCAAGGCACTGGTAGAATTGATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATCCACGATGTAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCAATTGCAATTGTGCCTGAGAATCCTGACATTTCTGCTAATAGCATTCTGCTTAACGGTCTTGATTCTCCTCCATATTGTAATTCTGTGCCATCAACACTACCTAACCATCACCATCTTCGAGAATCAACTATGTCTTTTCTTGGTTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATAAGATTGTACAATCATTCGGATTGCATTCTCCCCTTGATCCTGGTCTTTCCTCACACAACTCAATGTATTACCGCCATTCCCTATCAAATGGCAACAATTCTTCTACTTCTAAGCCAACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGCGGTACCTTTCCCCCATCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCTAGAGTCCGGTTCTTCTTCACCGCATAATAGTGGCACGCTCGAGGCCATAATTTATCAGAAGAAGACTCTTCCAAATTCAAAGAACAATTATTCTGACAAGAGTTCACATTCATCTACTGCAACTCCTGTTGACAGAGCTGAGAGTTCTGCATTAAACATGAATGAGACAGAATGGGAAGATTACAATGACCAAGCGTCTCCCTTTGGTGCAACCTCAATCTTGAATGAGTGTCCTGCTGTTAACTCCAATGCAAACTCATGGGATAAATTGACACCTCAGAACTTTAGTGGAAACAATGTGAAATATGAGCCTGTTGACCAAGTTTGTACCCCAAACAGTGAAAATCCTATGTCTATGTTGAACATCACTTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGATGCTAGGGACAACTTAACAGATTACAAGCATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTTACTTTATGCACATGGCTTAA 1602 0.4307 MKRVKNENEDDVLCNDQIQPRLNGEGNGGSVGGGVVLKKGPWTSAEDAILIDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTPEEEQLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRSRAGLPLYPPDVSLRKIQGNQRGQGTGRIDDGDRGHHDFLPKNNYEIHDVIFDNLKENQGILPIAIVPENPDISANSILLNGLDSPPYCNSVPSTLPNHHHLRESTMSFLGSSGTNKNWFYPFYHVQDHSSDKIVQSFGLHSPLDPGLSSHNSMYYRHSLSNGNNSSTSKPTSKAVKLELPSLQYPETGFGGWGGTFPPSPLNESVDVFNQSPLPHGALESGSSSPHNSGTLEAIIYQKKTLPNSKNNYSDKSSHSSTATPVDRAESSALNMNETEWEDYNDQASPFGATSILNECPAVNSNANSWDKLTPQNFSGNNVKYEPVDQVCTPNSENPMSMLNITWPDVLLASDWHEQCYGHEKNMTDARDNLTDYKHVAGGTYSSSTGGYFMHMA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00213 533 FunFam MYB-related transcription factor 38 91 - -
Trre5g00213 533 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g00213 533 MobiDBLite consensus disorder prediction 144 176 - -
Trre5g00213 533 Gene3D - 38 91 - -
Trre5g00213 533 MobiDBLite consensus disorder prediction 295 315 - -
Trre5g00213 533 Gene3D - 94 140 - -
Trre5g00213 533 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Trre5g00213 533 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Trre5g00213 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Trre5g00213 533 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 504 - -
Trre5g00213 533 SMART sant 91 139 IPR001005 -
Trre5g00213 533 SMART sant 38 88 IPR001005 -
Trre5g00213 533 MobiDBLite consensus disorder prediction 334 370 - -
Trre5g00213 533 MobiDBLite consensus disorder prediction 343 370 - -
Trre5g00213 533 FunFam Transcription factor GAMYB 94 140 - -
Trre5g00213 533 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Trre5g00213 533 MobiDBLite consensus disorder prediction 383 407 - -
Trre5g00213 533 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Trre5g00213 533 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Trre5g00213 533 CDD SANT 41 86 IPR001005 -
Trre5g00213 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Trre5g00213 533 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00213 Trre-Chr5 1303320 1306115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00213 30 510 MYB Transcription Factor Family AT3G11440 42.857 3.28e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g00213 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00213 K09422 - gmx:100805804 659.448