Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00210 ATGTCAACCAAGAAGAAACAAAAACCGAAACGCAACGATAGCGATGAAGATGACGACATTTTCTACTACCGCTACTCCGTTCCATCGTCAACCGCCACCGCCGCCACCGCCGCCACCGCCACATCCAATAACCAAATCCAACCAATATCAAACAACAAAGGATCATCGACGATATCAACAACAGGTGAATCCTTAGCACCATCAAAATCAACGCTATACGTTTCAAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACTCTCTTTTCAACTTTCGGCCGAATCGCGCGTGTAACTGTTCTTAAAGACCGTCACACGCGCCTCAGCCGTGGTGTTGCATTTATCCAATTTGTTTCTCGTCAGGACGCGCAAACCGCCGTGAAGGAAATGAATAAGAAGATTCTTAATGGACGGACTTTGACGGCTTCTATTGCGGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAGGCGCGTGTATAATTCAGAAACTGGTTTGTGTTTTGAGTGTGGTGATCATGGTCATTTGTCTTATGAGTGTCCTAAGAATCAGTTAGGGCCGAGGGCTCGGCCGCAGCCTAAGAAGCCGAGGCGTGGGTTTGGTGGGTTTAGGGATAGAGAAGATGATGATGAGGAGGAAGAGGGTGGGAGGATTGGTGCAGCGCAGTTTGAGGAGGATGATTGGGCTTCCGCGGTGGATAATGGAGCGGGTGAGAGGTTGTTGGGGATGGATGGGAATGATGATGAGGCTATGGATGACAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAAGAGAAGTGGGTATTTTAGTGATGAGAGTGATCATGATGATGATGATGATGATGATTGA 858 0.472 MSTKKKQKPKRNDSDEDDDIFYYRYSVPSSTATAATAATATSNNQIQPISNNKGSSTISTTGESLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRQDAQTAVKEMNKKILNGRTLTASIAADNGRAPEFIRRRVYNSETGLCFECGDHGHLSYECPKNQLGPRARPQPKKPRRGFGGFRDREDDDEEEEGGRIGAAQFEEDDWASAVDNGAGERLLGMDGNDDEAMDDKRKKKKKKKKKGKRSGYFSDESDHDDDDDDD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00210 285 Gene3D - 1 154 IPR012677 -
Trre5g00210 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Trre5g00210 285 Gene3D - 157 200 - -
Trre5g00210 285 SUPERFAMILY RNA-binding domain, RBD 66 159 IPR035979 GO:0003676
Trre5g00210 285 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Trre5g00210 285 CDD RRM_ZCRB1 69 144 IPR034219 -
Trre5g00210 285 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 280 IPR044598 GO:0000398|GO:0005689
Trre5g00210 285 SUPERFAMILY Retrovirus zinc finger-like domains 157 184 IPR036875 GO:0003676|GO:0008270
Trre5g00210 285 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Trre5g00210 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Trre5g00210 285 MobiDBLite consensus disorder prediction 183 285 - -
Trre5g00210 285 SMART rrm1_1 71 144 IPR000504 GO:0003723
Trre5g00210 285 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00210 Trre-Chr5 1271508 1272365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00210 70 146 Eukaryotic Initiation Factors Gene Family AT4G34110 32.468 9.40e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00210 K13154 - psat:127137475 348.206