LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g00200	ATGGCAGAAAGTGCAGTATTATCGGCCGTGGGGGAAGTGTTTCAACTTCTTAAGAAAGAAAAAAATCTTCTGCAAGGTGTACATACTGATTTTTCAGACATCAAAGGTGAACTAGAAAGCATTCAAGTCTTCCTCAAAGATGCAGATAGAAGGGCAGCAGATGAAGCAGATACCAACGACGGAATAAGAACTTGGGTTAAGCAAATGAGAGAAGCATCATTTCGCATTGAAGATGTCATTGATGAATACCTTCGGCAGATCCATAGGTACAACCCTCCTGGATGCGGATCTTTATTCGGCAAGATTGCAAGCCTAAACAAAACTTTTATTCCCCGTCATAAAATTGCATCAGAGATTCAGGACATTAAGTTGTCAATTCGTGGAATCAAGGAAAGAAGCGAGAGGTATAACTTTCAAATTTCACATGACCAAGGATCTTCAAGAGGCAGAAACAGCACTGGAGAGACAGAAAATGGAAGATGGCGTGATCCTCGACTGTCTGCCCTTTTCATTGAAGAAACAGAAATTGTAGGATTTGAATGTCCGAGAGAGCAATTGTTTGGTTGGTTATTGGAGGGTGCATCTGAGCGCACCGTGATTTCAGTGGTGGGAATGGGAGGTATAGGGAAAACAACCCTCGCCAAGCTAGCTTTTGACAGCCAAAAGGTAACAACACAGTTTGATTGTCGTGCTTGCATCGCAGTTTCTCAATCATACACTGTGAGAGGTTTATTGATAAACATGATGGAGCAATTTTGTCGGGAAACTCAAGACCCTCTTCCGCAAATGTTACACAAAATGGATGACAAGTCACTGATTATTGAAGTGAGGCAATACCTACAAAATAAGAGGTATTTGATATTCTTTGATGATGTATGGCAAGAAGATTTTTCTGACCAGGTTGAATTTTCCATGCCTAATAACAATAAAGGTAGCAGGATAATAATCACTACTAGAATGATGCAAGTGGCAGATTTTTTCAAGAAATCCTTTCTAGTTCATGTTCACAACCTACAACTTTTGCCTCCAAACAAAGCATGGGAACTCTTCTGCACAAAAGTATTTAGATTTGAATTTGGTGGGCAATGTCCGACGGAGCTTGAAGTTGTGTCAAAAGAAATTGTTAAAAAATGCAAGCAGCTACCGCTAGCAATTGTAGCCATTTCTGGTCTACTTTCAACAAAATCTAAAACAATGGTTGAATGGAAAAAGGTTAGTCAAAACCTGAGCCTGGAGTTGGGACGTAATGCCCATTTAACGAGTCTAACAAAGATTTTGTCGCTTAGTTATGATGGCCTTCCTTGGTACTTGAAACCATGCATTTTTTATTTTGGTATATATCCAGAGGACTATTCTATTAATCATAAGAGATTAACTCGACAATGGATAGCCGAAGGGTTTGTTAAATCTGATGAGAGACAAACTCCAGAGCAAGTTGCAGCGGAGTACTTGTCTGAATTGATTCACAGAAGTCTGGTTCAGGTCTCAACTGTTGGCTTTGAAGGGAAAGTTAAAACATGTCGAGTCCATGATTTATTTCGGGAAGTGATCATTAGGAAAATGAAGGAATTAAGTTTCTGTCATTGCATGCAAGAAGATAGTGAATCAATCGAAGTTGGAAACACTAGACGCTTATCTATAGCCACTAATCCCAACAGTGTGTTGAAGAGCGCTAAGAATTCACATTTTCGTGCGATTCATGTGTTTGAAAGAGATGGATCATTGGAGCATTTGATGGGTAAAATGTGTTCACAGTCTAGAATTTTGAAGGTACTTGACATTCAAGGTACATTATTGAATCGTATTCCTAAAACTTTGGGGAGACTTTTCCACTTAAGGTACATAAACTTAAGTTATACAAAGGTAAAGGCCCTTCCTAAATCAGTTGGTGAGCTACAGAACTTAGAGACATTAGATTTGAGAGAAACACTTGTGCAAGAACTACCACGCGAAATAAACAAGCTAGCAAAGCTACGACACCTTCTTGCTTTCCATCGTAACTATGAAGCAAACTATTCTCTTTTAGGCTTTACAACTGGTGTGCGGATGGAAAAAGGTATTAAAAACATGACTTCCTTACAAAATCTTTATTATGTGGAGGTAGATCATGGTGGGGTAGATCTCATTCAAGAGATGAAAATGTTAAGGCAGTTACGGAGGTTAGGTTTAAGGCATGTAAGAAGAGAGCATGGAAATGCCTTATGTGCTGCAGTAGTAGAAATGAAACACCTTGAAAATCTTAATATCACTACCATAACTGCAGATGAAACAATAAACTTGAACTGTGTCTCATCTCCACCCCAACTTCAGCGGCTACATTTGAAAGCTAAACTAGATGCATTGCCTGATTGGATTCCAAAACTTGAGTATCTTGTTGAGATAAAGCTGGCTTTATCTAAGTTGAAAGAGGATCCGCTAATGTCACTGAAAAACTTGCCAAATCTACTGAAGCTCAGTATGTGGGACAACGCCTACGATGGTGAAATTTTGCATTTTCAATATGGAGGGTTTCTAAAGTTGAAGAAACTGAACCTCAGTCGCATGAATAGAGTAAATTCTATCATTATAGACAAGGGAGCTTTGCTCTCTCTTGAAAATATTTTAATGGACAAAATCCCCCAAGTGAAGGAAGTACCCTCTGGCATCAAGCACTTGGACAACCTCAAAGATATTATCTTCACTGATATGCCAGCTGAATTTTCTGAGAGCATTGATCCAGACAAAGGACAACACTACTGGATTATCAAGCATGTACCTTTTGTATTCATTCGCCACTGGATTGGTCCAAACTTACTTGATTTTGATAGTCGCACCATTCACTCGTCGTCCTAG	2832	0.3923	MAESAVLSAVGEVFQLLKKEKNLLQGVHTDFSDIKGELESIQVFLKDADRRAADEADTNDGIRTWVKQMREASFRIEDVIDEYLRQIHRYNPPGCGSLFGKIASLNKTFIPRHKIASEIQDIKLSIRGIKERSERYNFQISHDQGSSRGRNSTGETENGRWRDPRLSALFIEETEIVGFECPREQLFGWLLEGASERTVISVVGMGGIGKTTLAKLAFDSQKVTTQFDCRACIAVSQSYTVRGLLINMMEQFCRETQDPLPQMLHKMDDKSLIIEVRQYLQNKRYLIFFDDVWQEDFSDQVEFSMPNNNKGSRIIITTRMMQVADFFKKSFLVHVHNLQLLPPNKAWELFCTKVFRFEFGGQCPTELEVVSKEIVKKCKQLPLAIVAISGLLSTKSKTMVEWKKVSQNLSLELGRNAHLTSLTKILSLSYDGLPWYLKPCIFYFGIYPEDYSINHKRLTRQWIAEGFVKSDERQTPEQVAAEYLSELIHRSLVQVSTVGFEGKVKTCRVHDLFREVIIRKMKELSFCHCMQEDSESIEVGNTRRLSIATNPNSVLKSAKNSHFRAIHVFERDGSLEHLMGKMCSQSRILKVLDIQGTLLNRIPKTLGRLFHLRYINLSYTKVKALPKSVGELQNLETLDLRETLVQELPREINKLAKLRHLLAFHRNYEANYSLLGFTTGVRMEKGIKNMTSLQNLYYVEVDHGGVDLIQEMKMLRQLRRLGLRHVRREHGNALCAAVVEMKHLENLNITTITADETINLNCVSSPPQLQRLHLKAKLDALPDWIPKLEYLVEIKLALSKLKEDPLMSLKNLPNLLKLSMWDNAYDGEILHFQYGGFLKLKKLNLSRMNRVNSIIIDKGALLSLENILMDKIPQVKEVPSGIKHLDNLKDIIFTDMPAEFSESIDPDKGQHYWIIKHVPFVFIRHWIGPNLLDFDSRTIHSSS	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g00200	943	Gene3D	-	341	429	IPR042197	-
	Trre5g00200	943	MobiDBLite	consensus disorder prediction	140	160	-	-
	Trre5g00200	943	PANTHER	DISEASE RESISTANCE PROTEIN RP	33	861	IPR044974	GO:0006952
	Trre5g00200	943	FunFam	Probable disease resistance protein At1g61300	162	330	-	-
	Trre5g00200	943	Gene3D	-	166	333	IPR027417	-
	Trre5g00200	943	PRINTS	Disease resistance protein signature	378	392	-	-
	Trre5g00200	943	PRINTS	Disease resistance protein signature	199	214	-	-
	Trre5g00200	943	PRINTS	Disease resistance protein signature	630	646	-	-
	Trre5g00200	943	PRINTS	Disease resistance protein signature	279	293	-	-
	Trre5g00200	943	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	160	443	IPR027417	-
	Trre5g00200	943	CDD	RX-CC_like	2	131	IPR038005	-
	Trre5g00200	943	Pfam	NB-ARC domain	184	431	IPR002182	GO:0043531
	Trre5g00200	943	Gene3D	-	4	116	-	-
	Trre5g00200	943	MobiDBLite	consensus disorder prediction	140	154	-	-
	Trre5g00200	943	Gene3D	-	430	521	IPR036388	-
	Trre5g00200	943	FunFam	Probable disease resistance protein At1g63360	430	519	-	-
	Trre5g00200	943	Pfam	Rx N-terminal domain	5	90	IPR041118	-
	Trre5g00200	943	SUPERFAMILY	L domain-like	509	903	-	-
	Trre5g00200	943	Gene3D	Ribonuclease Inhibitor	550	907	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g00200	Trre-Chr5	1225611	1228442	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g00200	200	662	WRKY Transcription Factor Family	AT5G45050	23.993	7.51e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g00200	K13457		-	tpra:123915389	1745.33