Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00191 ATGGCTAGGATAAGTCTTGGATCCAAAGGAAGCAAGATACAACTCTTAACTAACCATTTTAGAGTTGGCCTTAGCAAGAATAATGGCTACTTCTATCATTATAATGTTTCTTTATGTTATCAAGATGGGCCCCTAGTAGAAGTGAAAGGTGCGAGGAAAAAAGTCATAGACAAACTTTGTGAAACGTATGACGTATTGAAAAACAAGAATTTTGCATATGATGGCGACCAAAGCTTATTCACTCTTGGTTCTCTACATCATAATAAACAAGAATTCATTGTTGTGTTAGAAGAAGTTTCATCAATGAGGGTTGGAAGCAACCCCAATGAAGTAGCCAAGAGAATGAAGTGTCAATCACGATCCAAATTTTTTAAGGTTGAGATTACTTATTTAGCGAAAATCCCATTACAAGAGATTGAAAAAGTAGTACAAGGTCAAGAATCTGAGCATCATCAAGAAGTATTAAAGGTTCTAGACGTAATATTGAGCCAGAATGCAACAAAGCAGGGGTGTCTCCGTATTCGCCAATCATACTTTCATGATAATCCAAGGAATATTACTAATATTGATGGTGGTGTTCAATGTTGTCGCAGTTTCCATTCCAGCTTCAAAGTCACACAAAAGGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTGTAAAGCCTGGTCCTGTAGTGGACTTCCTTCTCCAAAACCAAAATGTTCAGCAAACAAACTTAATTGATTGGGCCAAGGCAAGAAGAATGCTGAAAAATATTAGAATCAAAGCTAACAATAGAGAGTACAAAATCACTGGACTAAGTGAGATGTCTTGCAGGGCACAAAAATTTTTAATTAAAAATGGAAATGATGTTAATGGTCAAGTGGAAATAACTGAAATAACAGTTTATGAATACTACAAACACAAGAAAAATATTGAACTCCATTATTCTATTGATATGCCATGCATCAATGTTGGCAAACCAAAGAAGCCAACTTATTTTCCTATGGAGTTATGCACATTAGTCCCGTTACAACGATACACTAGGGTACTGTCAAATAAGCAAAGGGCTCAATTTATGTTGGAGTCAAGGACTAGTCCTCATGAAAGAAAAGAAGCTTTGCAATATTCTTTAAAAAACAGTAGATATGACTCTGAGCCTATGTTTCGCTCTTTCGGGATTACTATTGAACCTTGTTTTACTAAAGTCAATGGTCGTGTTTTGCAAGCTCCAACGCTTGTTGTCGGAAGTGGACATAACTTTTGTCCCCGAAATGGGAGCTGGAATTTCCATGATAAGAAACTAGTTGAGCCTGTGGAGATTAAGCGTTGGGGCATCGTAAACTTTTCATCACGGTGTGATATAAAACATTTGTGCAGTTTGATTAAAAAATGCTCAGAAATGAAAGGGATGGTCATACATCGTCCGTTCGATGTATTTGAAGAGGACAGTCGCTATAGGAGTGAGTCGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTATGGATCCTCCGGCTCAACTTCTTTTGTGTATCCTTCCGGTTAAGAATTGTGAGCTTTACGGTCCTTGGAAAAGGAGATGTCTTGTTGATGAAGGAATTGCAACACAATGCATTGCTCCAACAAAAAATATTAATGATCATTACATTAATAATGTACTATTGAAAATTAATGCAAAGCTTGGTGGGATGAATTCCTTTTTGTTATCCGAAGTTACGCGTTCCATACCATTGTTTTCTAACATACCTACATTGATTATTGGAATGGATGTTTCACATGGATCTCCATATCAGTTAAATGTACCATCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGCGCACAGTCATCAAAAGTAGAGATGATTTCATCTCTATTCAAGCCTGTTTCAGATACTAAGGATGACGGTATCATTAGTGAGTTGCTTAAGGACTTCCGCGCAACTTCAGGAATGAAGCCTAAACAAATTATAATTTTCAGGGATGGAGTGAGTGATTCACAGTTCAACCAGGTTCTCAACATTGAATTGGAAGAAATCATAAAGGCATGCAAACATCTTGATGAAAGTTGGTGTCCAAAGTTTACAGTGATTGTTGCACAGAAGAATCACCATACTAGATTCTTCAAACCTAATGCTTCTCAAGAAAATGTTTCACCTGGAACTGTTATAGATAACACTATATGTCAACCCAAAAACAATGACTTCTACATGTGTGCACATGCTGGAAGGATTGGTACAAGTCGCCCTACTCATTATCATGTTTTATTTGATGAAATTGGATTCTCAGCAGATAATTTGCAAGAATTAGTGCATTCTCTATGTTATGTGCACCAAAGGAGCACAAATGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCAGCTGCTCAGATGGCACAAATTATAAAATTTGATGAGTCAGAGACTCTTTCCAGCCACAATGAATCCACCTCTGCAGATATATCTCAAGTTCTTGAGTTACCACGTCTTCATGATCGAGTTGCCAATACTATGTTTTTTTGTTAG 2580 0.3748 MARISLGSKGSKIQLLTNHFRVGLSKNNGYFYHYNVSLCYQDGPLVEVKGARKKVIDKLCETYDVLKNKNFAYDGDQSLFTLGSLHHNKQEFIVVLEEVSSMRVGSNPNEVAKRMKCQSRSKFFKVEITYLAKIPLQEIEKVVQGQESEHHQEVLKVLDVILSQNATKQGCLRIRQSYFHDNPRNITNIDGGVQCCRSFHSSFKVTQKGLSLNVDVSTTLLVKPGPVVDFLLQNQNVQQTNLIDWAKARRMLKNIRIKANNREYKITGLSEMSCRAQKFLIKNGNDVNGQVEITEITVYEYYKHKKNIELHYSIDMPCINVGKPKKPTYFPMELCTLVPLQRYTRVLSNKQRAQFMLESRTSPHERKEALQYSLKNSRYDSEPMFRSFGITIEPCFTKVNGRVLQAPTLVVGSGHNFCPRNGSWNFHDKKLVEPVEIKRWGIVNFSSRCDIKHLCSLIKKCSEMKGMVIHRPFDVFEEDSRYRSESPSSRVARMYEKLKAKMPGPPMDPPAQLLLCILPVKNCELYGPWKRRCLVDEGIATQCIAPTKNINDHYINNVLLKINAKLGGMNSFLLSEVTRSIPLFSNIPTLIIGMDVSHGSPYQLNVPSIAAVVSSRYWPQISRYKAVVRAQSSKVEMISSLFKPVSDTKDDGIISELLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLNIELEEIIKACKHLDESWCPKFTVIVAQKNHHTRFFKPNASQENVSPGTVIDNTICQPKNNDFYMCAHAGRIGTSRPTHYHVLFDEIGFSADNLQELVHSLCYVHQRSTNAISIVAPIYYADLAAAQMAQIIKFDESETLSSHNESTSADISQVLELPRLHDRVANTMFFC 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00191 859 Pfam N-terminal domain of argonaute 12 162 IPR032474 -
Trre5g00191 859 Gene3D paz domain 218 343 - -
Trre5g00191 859 CDD PAZ_argonaute_like 224 338 - -
Trre5g00191 859 Gene3D - 403 574 - -
Trre5g00191 859 FunFam Protein argonaute 7 219 343 - -
Trre5g00191 859 Pfam PAZ domain 228 355 IPR003100 GO:0005515
Trre5g00191 859 Pfam Argonaute linker 1 domain 174 220 IPR014811 -
Trre5g00191 859 Pfam Piwi domain 514 821 IPR003165 GO:0003676
Trre5g00191 859 SUPERFAMILY Ribonuclease H-like 508 819 IPR012337 -
Trre5g00191 859 Gene3D - 580 859 IPR036397 GO:0003676
Trre5g00191 859 SMART PAZ_2_a_3 225 361 IPR003100 GO:0005515
Trre5g00191 859 SMART DUF1785_2 172 224 IPR014811 -
Trre5g00191 859 Pfam Argonaute linker 2 domain 365 410 IPR032472 -
Trre5g00191 859 CDD Piwi_ago-like 383 815 IPR045246 -
Trre5g00191 859 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 823 - -
Trre5g00191 859 SMART Piwi_a_2 513 821 IPR003165 GO:0003676
Trre5g00191 859 SUPERFAMILY PAZ domain 219 379 IPR036085 GO:0005515
Trre5g00191 859 FunFam Protein argonaute 3 581 859 - -
Trre5g00191 859 ProSiteProfiles Piwi domain profile. 513 821 IPR003165 GO:0003676
Trre5g00191 859 ProSiteProfiles PAZ domain profile. 262 339 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00191 Trre-Chr5 1166867 1172126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00191 3 859 Eukaryotic Initiation Factors Gene Family AT5G43810 33.557 7.82e-154 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00191 K11593 - pop:7486850 1058.9