Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00190 ATGAAAAAAACATTGAATCCGGACCATTTGTCTATGGCTAGGATAAGTCTTGGATCCAAAGGAAGCAAGATACAACTCTTAACTAACCATTTTAGAGTTGGCCTTAGCAAGAATAATGGCTACTTCTATCATTATAATGTTTCTTTATGTTATCAAGATGGGCCCCTAGTAGAAGTGAAAGGTGCGAGGAAAAAAGTCATAGACAAACTTTGTGAAACGTATGACGTATTGAAAAACAAGAATTTTGCATATGATGGCGACCAAAGCTTATTCACTCTTGGTTCTCTACATCATAATAAACAAGAATTCATTGTTGTGTTAGAAGAAGTTTCATCAATGAGGGTTGGAAGCAACCCCAATGAAGTAGCCAAGAGAATGAAGTGTCAATCACGATCCAAATTTTTTAAGGTTGAGATTACTTATTTAGCGAAAATCCCATTACAAGAGATTGAAAAAGTAGTACAAGGTCAAGAATCTGAGCATCATCAAGAAGTATTAAAGGTTCTAGACGTAATATTGAGCCAGAATGCAACAAAGCAGGGGTGTCTCCGTATTCGCCAATCATACTTTCATGATAATCCAAGGAATATTACTAATATTGATGGTGGTGTTCAATGTTGTCGCAGTTTCCATTCCAGCTTCAAAGTCACACAAAAGGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTGTAAAGCCTGGTCCTGTAGTGGACTTCCTTCTCCAAAACCAAAATGTTCAGCAAACAAACTTAATTGATTGGGCCAAGGCAAGAAGAATGCTGAAAAATATTAGAATCAAAGCTAACAATAGAGAGTACAAAATCACTGGACTAAGTGAGATGTCTTGCAGGGCACAAAAATTTTTAATTAAAAATGGAAATGATGTTAATGGTCAAGTGGAAATAACTGAAATAACAGTTTATGAATACTACAAACACAAGAAAAATATTGAACTCCATTATTCTATTGATATGCCATGCATCAATGTTGGCAAACCAAAGAAGCCAACTTATTTTCCTATGGAGTTATGCACATTAGTCCCGTTACAACGATACACTAGGGTACTGTCAAATAAGCAAAGGGCTCAATTTATGTTGGAGTCAAGGACTAGTCCTCATGAAAGAAAAGAAGCTTTGCAATATTCTTTAAAAAACAGTAGATATGACTCTGAGCCTATGTTTCGCTCTTTCGGGATTACTATTGAACCTTGTTTTACTAAAGTCAATGGTCGTGTTTTGCAAGCTCCAACGCTTGTTGTCGGAAGTGGACATAACTTTTGTCCCCGAAATGGGAGCTGGAATTTCCATGATAAGAAACTAGTTGAGCCTGTGGAGATTAAGCGTTGGGGCATCGTAAACTTTTCATCACGGTGTGATATAAAACATTTGTGCAGTTTGATTAAAAAATGCTCAGAAATGAAAGGGATGGTCATACATCGTCCGTTCGATGTATTTGAAGAGGACAGTCGCTATAGGAGTGAGTCGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTATGGATCCTCCGGCTCAACTTCTTTTGTGTATCCTTCCGGTTAAGAATTGTGAGCTTTACGGTCCTTGGAAAAGGAGATGTCTTGTTGATGAAGGAATTGCAACACAATGCATTGCTCCAACAAAAAATATTAATGATCATTACATTAATAATGTACTATTGAAAATTAATGCAAAGCTTGGTGGGATGAATTCCTTTTTGTTATCCGAAGTTACGCGTTCCATACCATTGTTTTCTAACATACCTACATTGATTATTGGAATGGATGTTTCACATGGATCTCCATATCAGTTAAATGTACCATCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGCGCACAGTCATCAAAAGTAGAGATGATTTCATCTCTATTCAAGCCTGTTTCAGATACTAAGGATGACGGTATCATTAGTGAGTTGCTTAAGGACTTCCGCGCAACTTCAGGAATGAAGCCTAAACAAATTATAATTTTCAGGGATGGAGTGAGTGATTCACAGTTCAACCAGGTTCTCAACATTGAATTGGAAGAAATCATAAAGGCATGCAAACATCTTGATGAAAGTTGGTGTCCAAAGTTTACAGTGATTGTTGCACAGAAGAATCACCATACTAGATTCTTCAAACCTAATGCTTCTCAAGAAAATGTTTCACCTGGAACTGTTATAGATAACACTATATGTCAACCCAAAAACAATGACTTCTACATGTGTGCACATGCTGGAAGGATTGGTACAAGTCGCCCTACTCATTATCATGTTTTATTTGATGAAATTGGATTCTCAGCAGATAATTTGCAAGAATTAGTGCATTCTCTATGTTATGTGCACCAAAGGAGCACAAATGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCAGCTGCTCAGATGGCACAAATTATAAAATTTGATGAGTCAGAGACTCTTTCCAGCCACAATGAATCCACCTCTGCAGATATATCTCAAGTTCTTGAGTTACCACGTCTTCATGATCGAGTTGCCAATACTATGTTTTTTTGTTAG 2613 0.3743 MKKTLNPDHLSMARISLGSKGSKIQLLTNHFRVGLSKNNGYFYHYNVSLCYQDGPLVEVKGARKKVIDKLCETYDVLKNKNFAYDGDQSLFTLGSLHHNKQEFIVVLEEVSSMRVGSNPNEVAKRMKCQSRSKFFKVEITYLAKIPLQEIEKVVQGQESEHHQEVLKVLDVILSQNATKQGCLRIRQSYFHDNPRNITNIDGGVQCCRSFHSSFKVTQKGLSLNVDVSTTLLVKPGPVVDFLLQNQNVQQTNLIDWAKARRMLKNIRIKANNREYKITGLSEMSCRAQKFLIKNGNDVNGQVEITEITVYEYYKHKKNIELHYSIDMPCINVGKPKKPTYFPMELCTLVPLQRYTRVLSNKQRAQFMLESRTSPHERKEALQYSLKNSRYDSEPMFRSFGITIEPCFTKVNGRVLQAPTLVVGSGHNFCPRNGSWNFHDKKLVEPVEIKRWGIVNFSSRCDIKHLCSLIKKCSEMKGMVIHRPFDVFEEDSRYRSESPSSRVARMYEKLKAKMPGPPMDPPAQLLLCILPVKNCELYGPWKRRCLVDEGIATQCIAPTKNINDHYINNVLLKINAKLGGMNSFLLSEVTRSIPLFSNIPTLIIGMDVSHGSPYQLNVPSIAAVVSSRYWPQISRYKAVVRAQSSKVEMISSLFKPVSDTKDDGIISELLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLNIELEEIIKACKHLDESWCPKFTVIVAQKNHHTRFFKPNASQENVSPGTVIDNTICQPKNNDFYMCAHAGRIGTSRPTHYHVLFDEIGFSADNLQELVHSLCYVHQRSTNAISIVAPIYYADLAAAQMAQIIKFDESETLSSHNESTSADISQVLELPRLHDRVANTMFFC 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00190 870 Pfam Argonaute linker 2 domain 376 421 IPR032472 -
Trre5g00190 870 Gene3D paz domain 229 354 - -
Trre5g00190 870 Pfam N-terminal domain of argonaute 23 173 IPR032474 -
Trre5g00190 870 Pfam Argonaute linker 1 domain 185 231 IPR014811 -
Trre5g00190 870 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 834 - -
Trre5g00190 870 SMART Piwi_a_2 524 832 IPR003165 GO:0003676
Trre5g00190 870 CDD PAZ_argonaute_like 235 349 - -
Trre5g00190 870 ProSiteProfiles Piwi domain profile. 524 832 IPR003165 GO:0003676
Trre5g00190 870 CDD Piwi_ago-like 394 826 IPR045246 -
Trre5g00190 870 FunFam Protein argonaute 3 592 870 - -
Trre5g00190 870 SMART PAZ_2_a_3 236 372 IPR003100 GO:0005515
Trre5g00190 870 Gene3D - 591 870 IPR036397 GO:0003676
Trre5g00190 870 Pfam PAZ domain 239 366 IPR003100 GO:0005515
Trre5g00190 870 SUPERFAMILY PAZ domain 230 390 IPR036085 GO:0005515
Trre5g00190 870 Gene3D - 414 585 - -
Trre5g00190 870 SUPERFAMILY Ribonuclease H-like 519 830 IPR012337 -
Trre5g00190 870 Pfam Piwi domain 525 832 IPR003165 GO:0003676
Trre5g00190 870 SMART DUF1785_2 183 235 IPR014811 -
Trre5g00190 870 FunFam Protein argonaute 7 230 354 - -
Trre5g00190 870 ProSiteProfiles PAZ domain profile. 273 350 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00190 Trre-Chr5 1166867 1172159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00190 14 870 Eukaryotic Initiation Factors Gene Family AT5G43810 33.557 1.60e-153 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00190 K11593 - pop:7486850 1064.68