Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00189 ATGGGGTCTCAAGTTGTTGGCGATAACAATGAAAACCATTCGCAATTCCAGCCTCTGGCACGGCAAAACTCAATGTACAATCTTACCCTTGATGAAGTTGAGAGTCAATTAGGCGACTTGGGAAAACCACTAAGTAGTATGAACCTTGATGAGCTTCTGAAAAGTGTATGGACTGTTGAGGCAAACCAATCCGTTCGTATGGAAAATGAGAACGTAGCTCAAACCGAACAAGTTGTTTTCCAACGTCAGCCTAATCTATCGTTAAACAATGCATTAAGCAAGAAGACAGTTGATGAGGTTTGGAGAGATATCCAGCTAAGCAAAGGCGAAAAGGAGATGAATTCTCAAGAGAGACAATGTACTTTGGGAGAGATGACATTAGAAGATTTTTTGGTGGAAGCTGGTGTTGTTTCGGTTGCATCTTCTAATAGAAAGAATACTAACGATCCTAAAGTTGGCGTTGTTGATTCAAATGTACCGTTACCTCAGTTTGCACCACATGGTCCATGGATACAATATGCGCAGCCACATTTTCAGCATCCACAACAAAGTGTGATGGCGGCTTATGTTCCGAACCAAATGATAGCACAGCAGTTGCACATGGCAGCCGGTGCTCCATTGGATGTTGTTCAATATGCAGATGGTCAGGTGGCAATGGCTGCGCCTATGATGGGAAACTTATCTGATGCAAAGAAATCTGCGAGAAAACGGGGACCAGAGGACATGATGGTAGAAAAAACTGTCGAGAAGAAGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCACGCTCAAGAGCAAGGAAACAGGCATACACAACTGAATTGGAGTTCAAAGTCTCGCGCCTGGAAGAGGAAAATGAAAAGCTGAGGAAGGAGAAGGAGCTTGTGAACATGCTAGCCAATGCTCCACCGCCCGAGCCTAAGTGTCAGCTTCGCCGCGTATCATCGGCTTCATTCTGA 963 0.4476 MGSQVVGDNNENHSQFQPLARQNSMYNLTLDEVESQLGDLGKPLSSMNLDELLKSVWTVEANQSVRMENENVAQTEQVVFQRQPNLSLNNALSKKTVDEVWRDIQLSKGEKEMNSQERQCTLGEMTLEDFLVEAGVVSVASSNRKNTNDPKVGVVDSNVPLPQFAPHGPWIQYAQPHFQHPQQSVMAAYVPNQMIAQQLHMAAGAPLDVVQYADGQVAMAAPMMGNLSDAKKSARKRGPEDMMVEKTVEKKQKRMIKNRESAARSRARKQAYTTELEFKVSRLEEENEKLRKEKELVNMLANAPPPEPKCQLRRVSSASF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00189 320 Pfam bZIP transcription factor 250 295 IPR004827 GO:0003700|GO:0006355
Trre5g00189 320 SUPERFAMILY Leucine zipper domain 250 297 IPR046347 GO:0003700|GO:0006355
Trre5g00189 320 MobiDBLite consensus disorder prediction 298 320 - -
Trre5g00189 320 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 318 IPR043452 GO:0003700|GO:0045893
Trre5g00189 320 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 300 - -
Trre5g00189 320 CDD bZIP_plant_BZIP46 250 296 - -
Trre5g00189 320 SMART brlzneu 246 303 IPR004827 GO:0003700|GO:0006355
Trre5g00189 320 Gene3D - 248 302 - -
Trre5g00189 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700|GO:0006355
Trre5g00189 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Trre5g00189 320 Coils Coil 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00189 Trre-Chr5 1163828 1165593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00189 17 320 bZIP Transcription Factor Family AT3G56850 50.804 3.92e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g00189 bZIP_1 8e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00189 K14432 - gmx:100811685 417.927