Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00187 ATGTCACCACCATTTTCTCTCACTCTTTCTCTTCTCTTTTTCATTCTCTTAGCACCATTGTTACTCCTAGCTCAATCTCCTTCCCCTTCTAATTCTTCGTCTGCCGCGTGCAAAGCGACATTGTATCCGAAACTATGTCGCTCGATGCTATCTACGATCCGTTCATCGCCTTCCGATCCATATAACTATGGAAAATTCTCCATTAAACAAAACCTAAAAGTAACAAGAAAACTAGCAAAAGTATTTTCTGATTTCCTCAAACGTCATCAATCATCTTCATCTTTAAACCATGAAGAGTTTGGTGCATTAGTTGATTGCAATGACCTTAACAAACTCAATGTAGATTACTTAGAATCCATTTCTGATGAACTCAAATCAGCTAGTACTTCATTATCAGATACAGAACTTGTTGATAAAATTGAAAGCTATCTTAGTGCTGTTACTACTAATCATTATACTTGCTTTGATGGGTTGGTTGTGACAAAAAGTAACATTGCTAATGCTCTTGCTTTTCCATTGAAAGAGGCTACACAATTTTATAGTGTTTCACTTGGTTTGGTCACTGAGGCTTTGAACAAAAACTTGAAAAAGAATAAGACTCGCAAACATGGTCTTCCTAATAAGTCATTCAAGGTTAGGCAACCACTTGAGAAGCTCATCAAGTATCTCCGCACAAAATATAGTTGCAAAACAACATCAAATTGTACAAGTACTACAAGAACTGAAAGGATTCTTAAAGAAAGTGAAAGCCAAGGAATTCTATTAAATGATTTTGTGATTGTGAGTCCTTATGGGACAGCTAACCACACTTCCATCGGAGATGCTATTGCTTCTGCACCAAATAACACAATGCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCTAAGGAAAAAAAGGGTATTCTTCTAGTTGGAGATGGTATTAACAAGACAATTATCACAGGGAATCATAGTGTTATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGTGAAAGATTTATAGCAGTGGACATTACATTCAAAAACACAGCTGGTCCTGAAAAACATCAAGCAGTAGCAGTGAGAAACAACGCCGACCTATCGACATTCTACCGATGCAGTTTCGAAGGTTATCAAGATACACTTTATGTTCACTCATTAAGACAATTCTATAGAGATTGCAAAATCTATGGCACAGTCGACTTCATTTTCGGCAACGCAGCTGTAGTTTTCCAGAATTGCAACATCTATGCTAGAAAACCAATGGAAAATCAGAAAAATGCTGTGACAGCACAAGGAAGAACTGATCCAAATCAAAACACTGGAATTTCAATCCAAAACTGTACTATTGATGCTGCACCTGATTTGGCTAATGACTTGAATTCGACATCGAGTTACTTAGGTAGACCATGGAAGATTTATTCAAGAACTGTTTATATGCAATCATATATTGGTAATTTTGTTGATCCTTCTGGTTGGTTAGAGTGGAATGGAACACTTGGATTAGACACTATATTTTATGGTGAGTTTAATAACTATGGACCTGGTTCTATAACCGAAAATAGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACATGGCTTCCTGATACGGATATACCTTACACTGAAGGGTTACTGAAGTAA 1722 0.3647 MSPPFSLTLSLLFFILLAPLLLLAQSPSPSNSSSAACKATLYPKLCRSMLSTIRSSPSDPYNYGKFSIKQNLKVTRKLAKVFSDFLKRHQSSSSLNHEEFGALVDCNDLNKLNVDYLESISDELKSASTSLSDTELVDKIESYLSAVTTNHYTCFDGLVVTKSNIANALAFPLKEATQFYSVSLGLVTEALNKNLKKNKTRKHGLPNKSFKVRQPLEKLIKYLRTKYSCKTTSNCTSTTRTERILKESESQGILLNDFVIVSPYGTANHTSIGDAIASAPNNTMPQDGYFLIYVREGYYEEYVIVPKEKKGILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFKNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPMENQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLANDLNSTSSYLGRPWKIYSRTVYMQSYIGNFVDPSGWLEWNGTLGLDTIFYGEFNNYGPGSITENRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00187 573 SMART PMEI_2 28 186 IPR006501 GO:0004857
Trre5g00187 573 SUPERFAMILY Pectin lyase-like 257 570 IPR011050 -
Trre5g00187 573 Gene3D - 257 573 IPR012334 -
Trre5g00187 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 188 IPR035513 -
Trre5g00187 573 PANTHER PECTINESTERASE 16 561 - -
Trre5g00187 573 Pfam Plant invertase/pectin methylesterase inhibitor 34 185 IPR006501 GO:0004857
Trre5g00187 573 FunFam Pectinesterase 254 571 - -
Trre5g00187 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 190 IPR035513 -
Trre5g00187 573 NCBIfam pectinesterase inhibitor domain 7 172 IPR006501 GO:0004857
Trre5g00187 573 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Trre5g00187 573 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Trre5g00187 573 CDD PMEI-like_3 35 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00187 Trre-Chr5 1137071 1141357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00187 36 572 Carbohydrate Esterase AT3G10720 61.738 0.0 698