Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00186 ATGTCTCCCTTCAAATCCTATGGAAAAGTTAATGAACTTGATCAAATGATGTTAGAAGCAAAGAGAAAAACAAGAAAGAGAATCACAATCATAGGCTTATCTTCAATAATCTTTATTGGTGTTGTAATTGGAGCTGTATTTGGAGTTGTTAACAACAACTCAAAAAATGATCATGACAATAATGCATCACAAAATTCAGTGACTAATTCAATGAAAGCTGTTTGTGATGTAACATTGTACAAGGATTCATGTTACGAGAGTCTTCACTCTGTCGTAAACTCGGGAAAAGATGTTCAACCTGAAGAGTTGTTTAAATTGTCTATTAATGTGGCATTAACTCATGTGTCTAAAATTATTGAGTATTTTAATGATCATGGTGTTTTCAAAAACTTGATTGGTAATGATAGTAGGAATAAGGAAGCTTTGAAAAATTGTAGGGATCTTTTGGACCTTGCTGTTGACCATTTGAATAACTCATTGACTACTTCAGGGGAAAATTCTTCACTTTTTCAAGTTTTTGATGATCTACAAACATGGTTAAGTGCTGCAGGGACATACCAACAAACTTGCATTGAAGGCTTTGAGGATACAAAAGAAGAACTTAAGAAAAGTGTAGTAAGCTATCTTAAAAATTCTACAGAATACACAAGCAACAGTCTTGCCATAATTACATGGATTAACAAGGTTTCAAACACACTCAATTTGAGACGTTTAATGAGTTTACCTTATGAAAATGAATCACCAAAATGGCTTAATTCAAAAGATAGGAAACTTCTTGTGACAAAGGATTTGAGATCAAAAGCTGATATAGTTGTTGCTAAAGATGGTAGTGGGAAATATAAAACTATATCTGAAGCACTTAAACATGTTCCTAATAAGAGTACGAAGAGAACTTTGATTTATGTGAAGAAAGGGATTTACTATGAGAATGTTAGAGTAGAGAAGACAAAATGGAATGTGATGATTGTTGGTGATGGTATGACTGCTTCAGTTGTTTCTGGTAGGCTTAATGTTGTCGATGGCACACCAACATTTTCATCTGCAACATTTGCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGTTTTCGCAATACAGCAGGTCCACAGAAGCACCAAGCAGTAGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAAATGTCATATTGATGCTTACCAAGACACTCTTTATGTTCATTCCAATCGCCAATTCTATAGAGAATGCAACATTTATGGAACAGTTGATTTTATTTTTGGAAATTCAGCAGCTGTTATTCAAAACTGTAACATTATGCCAAAGTTACCTATGCATGGACAACAGAACACAATCACAGCACAGGGAAAAACTGATCCTAACATGAACACAGGTATCTCAATTCAATATTGCAACATTGCACCTTTTGGAAACTTGAGCACTGTCCAAACATACCTTGGAAGACCATGGAAGAATTACTCAACCACAGTATACATAAGATCAAGAATGGAAAGTTTTATTAATCCAAAAGGTTGGTTACCTTGGGTAGGGAACTCAGCACCAGACACTATTTTTTATGCAGAATTTCAGAATGTTGGACGAGGTGCTTCAACAAAGAATAGAGTGAAATGGAAGGGTTTGAAAAATATTAGTATTAAACAAGCTAATAAGTTTTCAGTTAAGGATTTTATTCAAGGTGATAGATGGATTCCTGCATCAGCTGCACCATTTAAGGCTAATATATGA 1728 0.3461 MSPFKSYGKVNELDQMMLEAKRKTRKRITIIGLSSIIFIGVVIGAVFGVVNNNSKNDHDNNASQNSVTNSMKAVCDVTLYKDSCYESLHSVVNSGKDVQPEELFKLSINVALTHVSKIIEYFNDHGVFKNLIGNDSRNKEALKNCRDLLDLAVDHLNNSLTTSGENSSLFQVFDDLQTWLSAAGTYQQTCIEGFEDTKEELKKSVVSYLKNSTEYTSNSLAIITWINKVSNTLNLRRLMSLPYENESPKWLNSKDRKLLVTKDLRSKADIVVAKDGSGKYKTISEALKHVPNKSTKRTLIYVKKGIYYENVRVEKTKWNVMIVGDGMTASVVSGRLNVVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSAAVIQNCNIMPKLPMHGQQNTITAQGKTDPNMNTGISIQYCNIAPFGNLSTVQTYLGRPWKNYSTTVYIRSRMESFINPKGWLPWVGNSAPDTIFYAEFQNVGRGASTKNRVKWKGLKNISIKQANKFSVKDFIQGDRWIPASAAPFKANI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00186 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 226 IPR035513 -
Trre5g00186 575 FunFam Pectinesterase 263 575 - -
Trre5g00186 575 SUPERFAMILY Pectin lyase-like 266 571 IPR011050 -
Trre5g00186 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 227 IPR035513 -
Trre5g00186 575 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Trre5g00186 575 SMART PMEI_2 66 222 IPR006501 GO:0004857
Trre5g00186 575 CDD PMEI-like_3 73 228 - -
Trre5g00186 575 Pfam Plant invertase/pectin methylesterase inhibitor 70 222 IPR006501 GO:0004857
Trre5g00186 575 NCBIfam pectinesterase inhibitor domain 64 226 IPR006501 GO:0004857
Trre5g00186 575 Gene3D - 264 575 IPR012334 -
Trre5g00186 575 FunFam Pectinesterase 67 227 - -
Trre5g00186 575 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Trre5g00186 575 PANTHER PECTINESTERASE 42 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00186 Trre-Chr5 1132810 1136327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00186 7 575 Carbohydrate Esterase AT3G10710 57.093 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00186 - - gmx:100811152 892.878