Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00182 ATGACTTTGATACCAAACGTTGCCGTATTATTAGGATCAAGTTTCAAGATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATTCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTGAAAACTCTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGGCCAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGAAGGACATTAGCTGATTACAATATCCAGAAGGAATCCACTCTTCATCTTGTCTTGCGGCTTCGTGGTGGTATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACCATAACTTTGGAGGTTGAGAGCTCAGACACTATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGAACTTTGGCCGATTACAACATACAGAAGGAATCAACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTTAAGACTTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGTACCTTGGCTGATTACAACATCCAGAAGGAATCAACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAAACTTTGACGGGGAAGACCATTACTTTAGAGGTAGAAAGTTCTGATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 1194 0.4489 MTLIPNVAVLLGSSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00182 397 Pfam Ubiquitin family 323 394 IPR000626 GO:0005515
Trre5g00182 397 Pfam Ubiquitin family 95 166 IPR000626 GO:0005515
Trre5g00182 397 Pfam Ubiquitin family 247 318 IPR000626 GO:0005515
Trre5g00182 397 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Trre5g00182 397 Pfam Ubiquitin family 171 242 IPR000626 GO:0005515
Trre5g00182 397 CDD Ubl_ubiquitin 321 396 - -
Trre5g00182 397 FunFam Polyubiquitin 3 321 396 - -
Trre5g00182 397 SUPERFAMILY Ubiquitin-like 319 396 IPR029071 -
Trre5g00182 397 ProSitePatterns Ubiquitin domain signature. 43 68 IPR019954 -
Trre5g00182 397 CDD Ubl_ubiquitin 17 92 - -
Trre5g00182 397 ProSitePatterns Ubiquitin domain signature. 271 296 IPR019954 -
Trre5g00182 397 SUPERFAMILY Ubiquitin-like 92 168 IPR029071 -
Trre5g00182 397 SUPERFAMILY Ubiquitin-like 244 320 IPR029071 -
Trre5g00182 397 FunFam Polyubiquitin 3 245 320 - -
Trre5g00182 397 CDD Ubl_ubiquitin 169 244 - -
Trre5g00182 397 FunFam Polyubiquitin 3 169 244 - -
Trre5g00182 397 Gene3D - 93 168 - -
Trre5g00182 397 Gene3D - 321 397 - -
Trre5g00182 397 Gene3D - 169 244 - -
Trre5g00182 397 Gene3D - 245 320 - -
Trre5g00182 397 Gene3D - 13 92 - -
Trre5g00182 397 ProSitePatterns Ubiquitin domain signature. 119 144 IPR019954 -
Trre5g00182 397 PRINTS Ubiquitin signature 69 90 IPR019956 -
Trre5g00182 397 PRINTS Ubiquitin signature 48 68 IPR019956 -
Trre5g00182 397 PRINTS Ubiquitin signature 27 47 IPR019956 -
Trre5g00182 397 ProSitePatterns Ubiquitin domain signature. 347 372 IPR019954 -
Trre5g00182 397 SUPERFAMILY Ubiquitin-like 168 244 IPR029071 -
Trre5g00182 397 ProSiteProfiles Ubiquitin domain profile. 321 396 IPR000626 GO:0005515
Trre5g00182 397 FunFam Polyubiquitin 3 93 168 - -
Trre5g00182 397 PANTHER UBIQUITIN 169 246 - -
Trre5g00182 397 CDD Ubl_ubiquitin 93 168 - -
Trre5g00182 397 ProSiteProfiles Ubiquitin domain profile. 93 168 IPR000626 GO:0005515
Trre5g00182 397 ProSiteProfiles Ubiquitin domain profile. 17 92 IPR000626 GO:0005515
Trre5g00182 397 SMART ubq_7 17 88 IPR000626 GO:0005515
Trre5g00182 397 SMART ubq_7 321 392 IPR000626 GO:0005515
Trre5g00182 397 SMART ubq_7 93 164 IPR000626 GO:0005515
Trre5g00182 397 SMART ubq_7 169 240 IPR000626 GO:0005515
Trre5g00182 397 SMART ubq_7 245 316 IPR000626 GO:0005515
Trre5g00182 397 SUPERFAMILY Ubiquitin-like 14 92 IPR029071 -
Trre5g00182 397 CDD Ubl_ubiquitin 245 320 - -
Trre5g00182 397 ProSitePatterns Ubiquitin domain signature. 195 220 IPR019954 -
Trre5g00182 397 ProSiteProfiles Ubiquitin domain profile. 245 320 IPR000626 GO:0005515
Trre5g00182 397 FunFam Polyubiquitin 3 17 92 - -
Trre5g00182 397 ProSiteProfiles Ubiquitin domain profile. 169 244 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00182 Trre-Chr5 1099433 1101364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00182 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.42e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00182 - K08770 pavi:110774095 741.88