Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00172 ATGAATACATCTGTCAATACGTGTGAAATCGTTGAGTTAAGGGAAGAGATATTTCCCGAGTTTGAAACGGATGGAAAACCTGAGAGTAGTTGTTCGTACAAATCAGGAAAAAGGTACTCGATTGAGGATGATATTAACCGTCTTTTCCAAGCTATTGATATTAAAAGTTCATCAAGAGGTCATAGTATATCGAGGTTGCAAAAGAGTGCTCTTAAAAGACCGATCAGAGTCTGTCCGTCTCAGGCATCGGGAATTGGCATCGCGGAGCCTGTAAGTTTGAAACAGGCACTTAGAGGATTGTGCATCTCTCAGGCATCAGAAATGGCTGCTTTGAAGAGACCATCAAAGCAATGCACCTCATCTAGAGTATCAGAGGTTAGCACGGTAAAAAAGTTGGTTGAAATCTCCCTAGTGCCGGAGATATCTACGCCTTATGGTAAATTTCCTGATGTAGCAATATCAAGCTCAAGTGCTAACCATTTCATTCCTGTTGTCAATGATGTGAGCTCAAAAGAAATGACAACTAGTTTTGTGTCCCGAGATCAGATCATACGTCTTCCATCCGAGGTTGAAGCTGGGAACCCAACAATAAAAACCGAGGAAGTGCTAGAGATCAGAACGCATCCTGCTACATCGAGTAAATCTTGTCTTGATTCTTCAACACTGGATAAGGACCGGGAGGAAAATTCGCATTGTGCATCTTGTCCATCCAACACTAGAAATGATGGTGGAGTCGACAAATCCTCAAGCATTAGTACATGTTTGGCAAAGCCAATATTCAATAACATGAACTTTTTTAAGAAAAAGGTAAAGAAAGACCTATGTTCGGCCTCGAGCTGCGCTACTAGTAGTTTTGACAAGGGGAATGGAAATTCTGATCTTAAGCATGAAGTGAAAGAAAATGATAAACAATCTCCGTGCAGTTCGAGTCATAGCATTGAAGTTTACTCAGTTAATGTTAGTAGAGATTCAAGTAAACCTAGTTCCAGTTTGAATTGCAATAAGAAAACCAAGTTTCTTGTTACAAAAGTTGATGAAAAATCAAGATCGAAGGAAAAGGGTGAGTTCTCGCAGAACTCAAAAAGTAGCATGGGTGAGTATAGTACTAGTAGCACAAGCATCAGTGAGGAGAGCAATTTTAGCGGTTCAAGTCGCAGTGGACAACGACCACACATGTCAAAACACTCGAGATGGGAAGCTATTCGTGCGGTTCAACAGCAGCATGGTAACTTAAATTTGAGGCATTTCAGGATGCGAAGGAAGATCGGTAGTGGAGACATTGGAACTGTTTATCTTGCAGAACTAATTGGTACTAGCTGCCTTTTTGCACTGAAAGTTATGGACAATGAATTTTTGGCTAGCAGGAAGAAAACATTTAGGGTCCAAACTGAAAGAGAGATCCTTCAAATGCTGGATCATCCATTTCTTCCTACACTTTATTCGTATATCAATACGGATAAGCTCACTTGCTTTGTCATGGAGTATTGTCCGGGCGGTGATCTGCATGTACTGCGACAGAAGCAAACATACAAGAGCTTTTCCGAGCAAGCAGCTAGGTTTTACGTTGCTGAAGTTCTTCTCGCCCTTGAGTATTTGCACATGATGGGAGTTGTATATCGAGATCTAAAGCCGGAAAATATCTTAGTACGCGAAGATGGACACATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTTAATGCAATGTTAGTCAAATCATCTTCACCCGACACAGATGCGACAAAGAAGATCTCAAGTCCTCCTTGTTCAGGGGCTAGCTGTATACACCCTTTTTGTCTCCAACCGGATTGGCAAGTTTCGTGCTTTACTCCTATTCTACTAAATCCAGGAGCGAAATCTCGGAAGATGAAGGCTGACTTAAGTGCTCAAGTTGGTTCACTGCCACAGCTTGTAGTTGAGCCTACCGATGCACGGTCTAACTCATTCGTTGGAACGTACGAATATCTTGCTCCAGAGATCATCAAAAGTGAGGGACATGGGAATGCTGTAGATTGGTGGACTTTCGGTATACTTTTGTTTGAGCTTTTATACGGAAAAACTCCCTTCAAAGGTCCATCGAACGATGATACATTATCCAACATCGTGTCGCAGAGCCTTAAGTTTCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAAAGGATTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCAATAAAAGGTGCTGCGGAAATTAAACAGCACCCTTTCTTTGTAGGCCTCAACTGGGCTCTAATACGGTGCGCAGCACCACCTGAGCTCCCCAAGTTTCGCGATTTTGGAACTAGTGCTTCATCTATGGCTACACATAAGGAGAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAACTGTTTTAG 2409 0.4164 MNTSVNTCEIVELREEIFPEFETDGKPESSCSYKSGKRYSIEDDINRLFQAIDIKSSSRGHSISRLQKSALKRPIRVCPSQASGIGIAEPVSLKQALRGLCISQASEMAALKRPSKQCTSSRVSEVSTVKKLVEISLVPEISTPYGKFPDVAISSSSANHFIPVVNDVSSKEMTTSFVSRDQIIRLPSEVEAGNPTIKTEEVLEIRTHPATSSKSCLDSSTLDKDREENSHCASCPSNTRNDGGVDKSSSISTCLAKPIFNNMNFFKKKVKKDLCSASSCATSSFDKGNGNSDLKHEVKENDKQSPCSSSHSIEVYSVNVSRDSSKPSSSLNCNKKTKFLVTKVDEKSRSKEKGEFSQNSKSSMGEYSTSSTSISEESNFSGSSRSGQRPHMSKHSRWEAIRAVQQQHGNLNLRHFRMRRKIGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSYINTDKLTCFVMEYCPGGDLHVLRQKQTYKSFSEQAARFYVAEVLLALEYLHMMGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNAMLVKSSSPDTDATKKISSPPCSGASCIHPFCLQPDWQVSCFTPILLNPGAKSRKMKADLSAQVGSLPQLVVEPTDARSNSFVGTYEYLAPEIIKSEGHGNAVDWWTFGILLFELLYGKTPFKGPSNDDTLSNIVSQSLKFPGTPIVSFHARDLIKGLLIKDPENRLGSIKGAAEIKQHPFFVGLNWALIRCAAPPELPKFRDFGTSASSMATHKENANDLEDIDDCEEFELF 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00172 802 MobiDBLite consensus disorder prediction 227 247 - -
Trre5g00172 802 Gene3D Phosphorylase Kinase; domain 1 414 495 - -
Trre5g00172 802 Gene3D Transferase(Phosphotransferase) domain 1 644 769 - -
Trre5g00172 802 FunFam serine/threonine-protein kinase D6PK-like 500 567 - -
Trre5g00172 802 MobiDBLite consensus disorder prediction 357 389 - -
Trre5g00172 802 MobiDBLite consensus disorder prediction 290 304 - -
Trre5g00172 802 ProSiteProfiles Protein kinase domain profile. 416 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00172 802 MobiDBLite consensus disorder prediction 232 247 - -
Trre5g00172 802 PANTHER FLIPPASE KINASE 1-RELATED 252 771 - -
Trre5g00172 802 MobiDBLite consensus disorder prediction 280 310 - -
Trre5g00172 802 SUPERFAMILY Protein kinase-like (PK-like) 389 773 IPR011009 -
Trre5g00172 802 Pfam Protein kinase domain 648 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00172 802 Pfam Protein kinase domain 418 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00172 802 Gene3D Transferase(Phosphotransferase) domain 1 496 565 - -
Trre5g00172 802 CDD STKc_phototropin_like 414 774 - -
Trre5g00172 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Trre5g00172 802 MobiDBLite consensus disorder prediction 348 396 - -
Trre5g00172 802 FunFam serine/threonine-protein kinase D6PK-like 646 769 - -
Trre5g00172 802 SMART serkin_6 416 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00172 Trre-Chr5 1011679 1014246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00172 296 802 AGC Kinase Gene Family AT3G52890 60.618 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre5g00172 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00172 - - gmx:100784955 1177.54