Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00163 ATGTTGTTAAGACGCAATCCAACATATTCAGATGAACAACAACAAGTGTTGTTTCCTCGTGGTGATTTGGGTGAATTGGATCAACTACCAAGTGACATCTTGTATCAAATTTTGAGACTTTTGGGTCCCAAAGAAGTTGCAAAGCTTAGTGTGATTTGCAAGTCTTTGAGATTCTTTGTATCTGATAATCGTTTATGGCTTCACTTTCTTCAAACTCATCAATCTGATCCATCTTGGGATTCTGTGTTTTTTGCTGAAACTAATTTGACCTCTGGTTACCCTCTTCCATCCTTTGTTGGCCAGAGACCTCAGTTGTCATTCAAACATATCTATGGTCAAAGAGCACAGGTTCCTGGTGCTATTATCATTGATGGTGGTTCTGGCTACTGCAAATTTGGTTGGAGCAAATATGCTTGTCCATCGGGGCGATCTGCAACATTTTTGGAATTTGGCAACATTGAGTCGCCAATGTACACTAGACTTCGACATTTTTTCGCGACAATTTATAACAGGATGCAAGTGAAACCAGATAAACAACCCGTTATTGTTTCTATACCAATATGCCATTATGAAGATACTGAATCAGCTAGAGCATCGAGACGACAACTTAAAGAAGCGATTTATTCTTCCCTGTTCGACTTGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCGACTCTAGCTCTGTATGCTGCAAAACGAATTTCTGGAATCGCTGTTAATATAGGTTTTCAAGTCACATCAGTAGTACCAATTTTTAATGGTAAAGTAATGCGCAAGGTCGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAAGTTACTGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTACGCGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATTAAAACAAAACACACAAGCATCGTTTCAAGCTGCGGGAGATGGATGGTTTACACTTTCAAAAGAGCGGTTTCAGACAGCAGAGGTTTTATTCAAGCCACATCTTGCTGGAATGCAAGCGATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGAGCATTGCCATTCTGCAGAATTACCAGGCGACAATGATTGGTACAAGACTGTAGTTTTATCAGGGGGGACTGCATGTTTGCCGGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATGCTTTACTTCCTCCATACATGTCGAATGGCATTAGAGTCATGCCTCCTCCATACGGTGTCGATACTCAATGGTTCGGAGGAAAGATGATTGGAAATTTGAGCACATTTCCTGGTCCGTGGTGTGTGGAAAAAAACAAGTTCCGCCAGAAGCCTAGGCTCAGCCTCATATGGTGA 1380 0.4174 MLLRRNPTYSDEQQQVLFPRGDLGELDQLPSDILYQILRLLGPKEVAKLSVICKSLRFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTSGYPLPSFVGQRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPDKQPVIVSIPICHYEDTESARASRRQLKEAIYSSLFDLNVPAVCAVNQATLALYAAKRISGIAVNIGFQVTSVVPIFNGKVMRKVGVEVVGLGALKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKQNTQASFQAAGDGWFTLSKERFQTAEVLFKPHLAGMQAMGLHQAIALCMEHCHSAELPGDNDWYKTVVLSGGTACLPGLAERLEKELHALLPPYMSNGIRVMPPPYGVDTQWFGGKMIGNLSTFPGPWCVEKNKFRQKPRLSLIW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00163 459 SUPERFAMILY Actin-like ATPase domain 234 443 IPR043129 -
Trre5g00163 459 CDD NBD_sugar-kinase_HSP70_actin 121 265 - -
Trre5g00163 459 Gene3D Actin; Chain A, domain 4 268 352 - -
Trre5g00163 459 Pfam F-box domain 26 67 IPR001810 GO:0005515
Trre5g00163 459 SMART actin_3 118 449 IPR004000 -
Trre5g00163 459 Gene3D - 14 93 - -
Trre5g00163 459 Gene3D - 164 450 - -
Trre5g00163 459 SUPERFAMILY F-box domain 19 82 IPR036047 GO:0005515
Trre5g00163 459 SUPERFAMILY Actin-like ATPase domain 119 240 IPR043129 -
Trre5g00163 459 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Trre5g00163 459 SMART fbox_2 29 69 IPR001810 GO:0005515
Trre5g00163 459 Pfam Actin 167 443 IPR004000 -
Trre5g00163 459 Gene3D - 225 424 - -
Trre5g00163 459 PANTHER ACTIN 161 446 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00163 Trre-Chr5 956736 962279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00163 167 455 Cytoskeleton Gene Families AT3G12110 32.432 4.44e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00163 K16616 - gmx:100791973 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00163 5 956736 962279 Trre5g00163 5 956736 962279 ECH