Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00161 ATGGCAGCTTCAGCATCATCCATGATATCAACTCATGCCTTAACCACAAACATTCAAAAACACCAAACACTTAACCTTAAGCCATCAAACTTATGCTTCCAAGGTTTCAAACCATTGACAAGGTCAACAAAAGTGACACAAAGCAAAAGGAGATTTTCTAGTCTTGTTGTCAAAGCTGAACTCAACCCTTCACTTGTGATAAGCTTAAGCACTGGCTTATCATTGTTTTTAGGAAGGTTTGTGTTTTTCAACTTTCAAAGAGAAAATGTAGCCAAACAAGGCTTACCTGAACAAAATGGTATAACACACTTTGAAGCTGGTGACAAACGTGCCAAAGAATATGTTAGCTTGCTTAAATCCAATGATCCTGTTGGTTTTAACCTTGTTGATGTTTTGGCTTGGGGTTCTTTAGGTCATATTGTTGCTTATTATATCTTGGCTACTTCTAGCAATGGTTATGATCCTAGTTTCTTTGGTTGA 480 0.3708 MAASASSMISTHALTTNIQKHQTLNLKPSNLCFQGFKPLTRSTKVTQSKRRFSSLVVKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGITHFEAGDKRAKEYVSLLKSNDPVGFNLVDVLAWGSLGHIVAYYILATSSNGYDPSFFG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00161 159 Gene3D - 63 158 IPR023618 GO:0009522|GO:0015979
Trre5g00161 159 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 22 158 IPR016370 -
Trre5g00161 159 Pfam Photosystem I psaG / psaK 63 153 IPR000549 GO:0009522|GO:0015979|GO:0016020
Trre5g00161 159 PIRSF PsaK 1 159 IPR016370 -
Trre5g00161 159 ProSitePatterns Photosystem I psaG and psaK proteins signature. 125 142 IPR000549 GO:0009522|GO:0015979|GO:0016020
Trre5g00161 159 NCBIfam photosystem I reaction center subunit V 66 154 IPR017494 GO:0009522|GO:0009535|GO:0015979
Trre5g00161 159 FunFam Photosystem I reaction center subunit V 63 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00161 Trre-Chr5 945699 946178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00161 K08905 - gmx:100305786 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00161 5 945699 946178 Trre5g00161 5 945699 946178 ECH