Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00160 ATGACCGAACTCACAATCACAAACAAAAACCCTTATCCTCCTCCAACCGCTCTCTACTCTGACCTTGTTCATGATCCTAACCTCTTCATGGAAAAGCTTCAATCTTTTCATGATTCATTTGGTACCAAATTCAAGATTCCTACTATTGGGGGAAAGCCACTAGATCTACATCACCTTTTCGTTGAAGTAACATCTCGTGGTGGTATAGAAAAGGTGATTGTAGATCGTAAATGGAAGGAAGTAGTTATGTCCTTCAAGTTCCGAGAAACCATAACAAGCGCATCATTCATGGTGCGCAAGTACTACCTATCGTTGCTGTATCACTTTGAGCAAGCGTATTATCTTTGCAAGCAAGTCCCTCCCTCACCACCTGATGCTTTGAGTGGGAACCTTGCCAATAGCTCCACAACCAATAGAGAGGGTGCTGCTATCAATGATTCACCTGTTCAGGTCAATCCAGCACAGACACTTGGTTCTTTAGTGCGGGGAACAGTTGATGGGAAATTTGATGGTGGATATATAGTAACTGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCTAGTAATGCGTCTCAGAATTTTTATACCGAAGGTACGCGTACGCCTATTTCAAGGAATAGAAAGAAATCAAGATTGGCATTAAGTGATCCATATCGTCCGAAATCAAACAGGAATGGTTACAATTTCTTTTTTGCTGAGAATTATGCCAGGCTAAAGCCTTCATTTTATGGACAAGAGGGAGCGCTTAACAAGAAAATTGGGGTTATGTGGAGAAGTCTGACAGACGCAGAAAGACAGGTTTATCGGGAGAAGGCGTTGAGGGATAAAGAAAGATACAGGATTGAAATGTTGAAGTACAAATCCAACAGTTCAACTCCTCAATAG 900 0.42 MTELTITNKNPYPPPTALYSDLVHDPNLFMEKLQSFHDSFGTKFKIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVVMSFKFRETITSASFMVRKYYLSLLYHFEQAYYLCKQVPPSPPDALSGNLANSSTTNREGAAINDSPVQVNPAQTLGSLVRGTVDGKFDGGYIVTVDLGSEQLKGVLYHVPSNASQNFYTEGTRTPISRNRKKSRLALSDPYRPKSNRNGYNFFFAENYARLKPSFYGQEGALNKKIGVMWRSLTDAERQVYREKALRDKERYRIEMLKYKSNSSTPQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00160 299 Coils Coil 274 294 - -
Trre5g00160 299 Gene3D - 20 122 IPR036431 GO:0003677
Trre5g00160 299 CDD HMG-box_AtHMGB9-like 225 291 - -
Trre5g00160 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 297 - -
Trre5g00160 299 Pfam HMG (high mobility group) box 225 292 IPR009071 -
Trre5g00160 299 SMART hmgende2 224 293 IPR009071 -
Trre5g00160 299 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 225 292 IPR009071 -
Trre5g00160 299 Gene3D High mobility group box domain 208 298 IPR036910 -
Trre5g00160 299 ProSiteProfiles ARID domain profile. 23 114 IPR001606 GO:0003677
Trre5g00160 299 SUPERFAMILY ARID-like 23 120 IPR036431 GO:0003677
Trre5g00160 299 CDD ARID_HMGB9-like 25 110 IPR045303 GO:0003677
Trre5g00160 299 SMART bright_3 24 115 IPR001606 GO:0003677
Trre5g00160 299 SUPERFAMILY HMG-box 213 294 IPR036910 -
Trre5g00160 299 SMART ARID_2 20 110 - -
Trre5g00160 299 Pfam ARID/BRIGHT DNA binding domain 28 110 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00160 Trre-Chr5 937671 941814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00160 17 294 ARID Transcription Factor Family AT3G13350 53.333 8.33e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre5g00160 ARID 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00160 - - lja:Lj3g3v1933050.2 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00160 5 937671 941814 Trre5g00160 5 937671 941814 ECH