Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00152 ATGCCGGAAAACGATCAACACCGTCTTCTTGGTTCATCAGAAGATGCAGAACGAGATGTTGAAGCTCACGGATCCGAAATCATTGCCAGCGTCAATGGCGGTGGTGGTAGTGGTGGAAGTAGTGGTAAAGGGTTCAGAGATTTGTTGAAATTATCTGGTCATCATCGTCATAGTTTTAAGCGGTTAGATAGAGAAAGAGATCATCATGATGATAGTAATATAAATAGTAATCCTCGTGATTCTCACTCTGATTTTGATCTTCATTCTTTTGATTCTTCTGGTGATGAGCTTGCTGATAGTGCACCTCCTGAATGGGCTTTGTTGCTTCTTGGTTGTCTCCTTGGTCTTGCCACTGGTCTCCTTGTTGCTGCTTTCAATAAAGGGGTGCATGTAATACATGAGTGGGTATGGGCCGGTACTCCGAATGAGGGCGCTGCTTGGCTTCGTTTGCAGAGATTGGCTGATACATGGCATCGAATCCTTTTGATACCAGTCACCGGAGGAGTAATGGTTGGCATGATGTGTGGTTTACTTGAAATATTGGACCAAATAAAGCAGGCAAGTTATTCCCCTCAAAGACAAGGTTTTGACCTGCTTGCAGGAATCTATCCAACGGTAAAGGCTATTCAGGCTGCAGTCACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGATATTGGAAAGTCTTGTGCCAATGGATTCTCATTAATGATGGAAAACAACAGAGAAAGAAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCAGCAGTTGCTGGTTGTTTCTTCGCTATTGAAACTGTGCTGAGGCCACTCCGTGCAGAAAATTCTCCTCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATTTCGTCAACTGTATCAAATGTCTTACAGGGAACCCAATCAGCTTTTACAGTGCCTGAGTACGAGTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTTGTGTAAGCGTGGCAATGACTCGTTTGGTTGCCTGGTTCACCAAATTTTTCGAGGTTATCCAGGAGAAGTTTGGCCTTCCTACTGTAGTCTGCCCTGCCATTGGTGGTTTAGGAGCTGGAATCATTGCCCTTAAATATCCCGGAATATTATACTGGGGTTTCACAAATGTGGAAGAAATTCTACGTACCGGCAAGAGTGCTTCCGCTCCTGGAATATGGCTTCTGACTCAATTAGCAGGTGCTAAGGTTATTGCCACAGCTCTTTGTAAGGGGTCTGGGCTGGTAGGTGGTCTTTATGCACCAAGTTTAATGATTGGAGCTGCAGTTGGTGCTGTGTTTGGAGGATTTGCTGCAGAAGTTATCAATTCAGCAATTCCTGGAAATGCCGCTGTTGCTCAACCCCAGGCTTATGCTCTGGTTGGAATGGCTGCTACACTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCTCTCATGGGGGCTGTCGGATTGGCAATTTGGGTTCCCTCAGTGACAAATCAGGCGAAGGAGAGTGATGCTCCTGATAAAAGAAAAATGTCTAGAGGATATTCTTCAATTTCGCATACCGAAGATAATGATGATGGCAATGGTTTAGAACTCTGTATTGTTGGAGATGGTTCCGAGCTTGAAGAAATCGATGAAGAACTGTTACTGGACAATCTTAAGGTTTCTCAGGCTATGTCAAAATACTATCTGAAGGTTCCATCATCTGTAACCCTAAAAGATGCAATCAAAATCATGCATGACAGCCAGCAAAACTGTGTGCTCGTGGTTGATGAAGATGATTTTCTGGAAGGAATATTGACATATGGAGACATTAGAAGGTGTCGATCTGAGAAGTCTAATAACGAGACTTCTATGAGCGACTCGGATGTGGATGTGAACACATTGCTTGTTTCCTCTGTTTGTACTCGAGGAATGAGCTATCGTGGGCGAGCACGTGGACTTCTAACTTGTTATCCAAATACTACTTTGGCTATGGCCAGAGAGTTAATGGAGGCCAAGGGCATTAAGCAATTACCTGTAGTTAAACGTAGTAGAGGTCACAATCGAGAGAGGAAGCGGAGAATTGTTGGTCTTCTTCATTATGACGAACTATGGCACTGTCTCAGGAAAGAGATTAACCACAGGAAGTTAGCTTATCAAAGTAGGACAGAAAACAATTTGACAACCGTTCATTAA 2271 0.4351 MPENDQHRLLGSSEDAERDVEAHGSEIIASVNGGGGSGGSSGKGFRDLLKLSGHHRHSFKRLDRERDHHDDSNINSNPRDSHSDFDLHSFDSSGDELADSAPPEWALLLLGCLLGLATGLLVAAFNKGVHVIHEWVWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVMVGMMCGLLEILDQIKQASYSPQRQGFDLLAGIYPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGTQSAFTVPEYELKSAAELPLYLILGMLCGCVSVAMTRLVAWFTKFFEVIQEKFGLPTVVCPAIGGLGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLAGAKVIATALCKGSGLVGGLYAPSLMIGAAVGAVFGGFAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQAKESDAPDKRKMSRGYSSISHTEDNDDGNGLELCIVGDGSELEEIDEELLLDNLKVSQAMSKYYLKVPSSVTLKDAIKIMHDSQQNCVLVVDEDDFLEGILTYGDIRRCRSEKSNNETSMSDSDVDVNTLLVSSVCTRGMSYRGRARGLLTCYPNTTLAMARELMEAKGIKQLPVVKRSRGHNRERKRRIVGLLHYDELWHCLRKEINHRKLAYQSRTENNLTTVH 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00152 756 FunFam Chloride channel protein 571 730 - -
Trre5g00152 756 SUPERFAMILY CBS-domain pair 584 738 IPR046342 -
Trre5g00152 756 SMART cbs_1 593 641 IPR000644 -
Trre5g00152 756 SMART cbs_1 678 734 IPR000644 -
Trre5g00152 756 Pfam CBS domain 586 638 IPR000644 -
Trre5g00152 756 Pfam CBS domain 678 726 IPR000644 -
Trre5g00152 756 SUPERFAMILY Clc chloride channel 103 528 IPR014743 -
Trre5g00152 756 Pfam Voltage gated chloride channel 201 524 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 Gene3D - 571 733 IPR046342 -
Trre5g00152 756 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 26 745 - -
Trre5g00152 756 MobiDBLite consensus disorder prediction 59 86 - -
Trre5g00152 756 MobiDBLite consensus disorder prediction 1 46 - -
Trre5g00152 756 MobiDBLite consensus disorder prediction 1 24 - -
Trre5g00152 756 Gene3D Clc chloride channel 94 544 - -
Trre5g00152 756 CDD Voltage_gated_ClC 122 521 - -
Trre5g00152 756 ProSiteProfiles CBS domain profile. 590 647 IPR000644 -
Trre5g00152 756 FunFam Chloride channel protein 95 540 - -
Trre5g00152 756 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 PRINTS Chloride channel signature 435 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 PRINTS Chloride channel signature 494 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 PRINTS Chloride channel signature 207 226 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 PRINTS Chloride channel signature 476 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00152 756 ProSiteProfiles CBS domain profile. 670 742 IPR000644 -
Trre5g00152 756 MobiDBLite consensus disorder prediction 533 554 - -
Trre5g00152 756 CDD CBS_pair_voltage-gated_CLC_euk_bac 590 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00152 Trre-Chr5 866567 873893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00152 K03281 - gmx:100787625 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00152 5 866567 873893 Trre5g00152 5 866567 873893 ECH