Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00145 ATGGCTGGGATTGATGAAAATCTTGCACTTAATGGTGATTGGGGTCTTCCTAGTCCAAGTCCAAGGGCCCTTTTTTCTAGAATGCTAGAAGAAGAAAACAATGTAATAAGACCAAATTCAGAACATTCTGGAAATGGTAGGACTGAGGCACAAGATGGTGATTCCGGTACACAATTGAGCGACATGAGTTATCCGACTGAGCAAAAATCGAGCTCGCGGGGTGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGATTTAATGCTCCCAGGTTGAATACAGAAAGCATTAGATCTACCGAACTTTCGCTCAATTCTGAGATTCAGTCTCCTTACTTGACTATACCACCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCTGTGTTCCTTGTGAATTCATTGGCACAACCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATTCGCTGCACAGAATTATCTTCCGATGTTCAAGAAAAATCTAAGCAGAATGGCTTTAATGATATTTATGCATCATCCTTTGCTTTCAAGCCTACAACAGATTCAGGGCCCTCTTTTTATCATGGTGCTGGTAGAAATATAAATCCAACTACACTTTCTCAGCAATCCCTTCATGGTGTTGAAGCTTCAGTTCAATCTCAAAGAGTTGATCAGGTCAAAGTTCAAACTGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAATTCTCCAACTCTCCACCTCAAAAAGACAATTCTCCACCAATGGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGTTGACTCGTTGGTTGCTGGTGGTACTCCATCGGAAGACGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGTGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGCCCAGTTAAAAAGAAAGTAGAACGTTCTCATGAGGGACATATAACGGAGATAATCTATAAGGGGGCACATAACCACCCGAAACCTCCTCCAAGTCGCCGGGCAGGCATTGGGTCCACTAACTCCCATGCTGACATGCACGTGGACAATCCTGAAGACGGTGAACCACAGGGTGGTGGTGATGGTGATCGTGGCTGGGCTAATTTACAAAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCTGCATCATCTCTCAACCCCGAGTACGGTAACCAGTCTACCAATCTGCAAACTCAAAATGGTACTGCTCACTTTGATTCAGGAGATGCAGTGGATGGCTCATCTACGTTTTCTAACGAAGGGGAAGATGATCAAGCTACTAATGGTAGTGTATCGTTAGGTTACGATGCGGAAGGGGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCCGAAATGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTTGATGATGGTTATCGGTGGCGTAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGCGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCTGCTGCTCGTTCTAGCAGTCATGTTAATGCGAATGCTTCTAATGCAGCTCAAGGGCAAGCTTCTGGTCTTCTTCAAAACCATGTTCATAGAACTGAACCATCTCAAATTCACAATGGCATGGGAAGGCCTTCATTTGGCTCATTCAACCTACCCGGAAGACAGCAGCTAGGTCACCCGCACGGCTTCTCCTTTGGCATGAATCAACACCTGTCGAACCTAGCAATGTCGGGATTAGGCTCTTCTTCGCAAGCGAAGTTTCCTGTAATGCCTATGAATCCATTCATGGCGCAACAACGCCCCACAAATGAAATGGGGTTCATGTTACCAAAGGGAGAACCAAATGTGGACACTAATCCTGAACGCAGCGGCCTTAACATGCATAATGGTTCGTCATCAATGTATCAAGATATTATGAATCACATGCCGCTTGGACCTCACATGTAA 2094 0.4427 MAGIDENLALNGDWGLPSPSPRALFSRMLEEENNVIRPNSEHSGNGRTEAQDGDSGTQLSDMSYPTEQKSSSRGGLVERIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLVNSLAQPSPTTGKFPFVSNGNIRCTELSSDVQEKSKQNGFNDIYASSFAFKPTTDSGPSFYHGAGRNINPTTLSQQSLHGVEASVQSQRVDQVKVQTENKSSLHLKAEFSNSPPQKDNSPPMEEQADEEGEQRVNVDSLVAGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRAGIGSTNSHADMHVDNPEDGEPQGGGDGDRGWANLQKGNIAGAGNWKHDNLEAASSLNPEYGNQSTNLQTQNGTAHFDSGDAVDGSSTFSNEGEDDQATNGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHVHRTEPSQIHNGMGRPSFGSFNLPGRQQLGHPHGFSFGMNQHLSNLAMSGLGSSSQAKFPVMPMNPFMAQQRPTNEMGFMLPKGEPNVDTNPERSGLNMHNGSSSMYQDIMNHMPLGPHM 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00145 697 FunFam WRKY transcription factor 33 477 543 - -
Trre5g00145 697 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 567 IPR044810 GO:0003700
Trre5g00145 697 MobiDBLite consensus disorder prediction 195 249 - -
Trre5g00145 697 MobiDBLite consensus disorder prediction 191 282 - -
Trre5g00145 697 MobiDBLite consensus disorder prediction 552 571 - -
Trre5g00145 697 SUPERFAMILY WRKY DNA-binding domain 274 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 Gene3D WRKY domain 477 543 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 MobiDBLite consensus disorder prediction 450 465 - -
Trre5g00145 697 MobiDBLite consensus disorder prediction 396 444 - -
Trre5g00145 697 Pfam WRKY DNA -binding domain 491 547 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 Pfam WRKY DNA -binding domain 277 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 MobiDBLite consensus disorder prediction 31 75 - -
Trre5g00145 697 MobiDBLite consensus disorder prediction 325 467 - -
Trre5g00145 697 Gene3D WRKY domain 264 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 MobiDBLite consensus disorder prediction 547 571 - -
Trre5g00145 697 SMART WRKY_cls 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 SMART WRKY_cls 490 549 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 FunFam WRKY transcription factor 263 336 - -
Trre5g00145 697 SUPERFAMILY WRKY DNA-binding domain 482 550 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 ProSiteProfiles WRKY domain profile. 271 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 ProSiteProfiles WRKY domain profile. 485 550 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00145 697 MobiDBLite consensus disorder prediction 38 73 - -
Trre5g00145 697 MobiDBLite consensus disorder prediction 583 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00145 Trre-Chr5 847096 851175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00145 1 692 WRKY Transcription Factor Family AT5G56270 49.863 7.14e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g00145 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00145 K18835 - gmx:100127395 1038.87