Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00143 ATGTCATGTAAATTTTCACCAACAAGAACAACAAGTGTTATTGTTCTTCATATGTTTGTTTCATTCATAACACTAACCTTAACAACATCAACAACAACAACCTTTGATTCAACAACGTTGTTGTTAAACAATTTCAAACACTCAAATATAATTTCTGATCCCAAAAACTTCCTTTCAAATTGGTCACTTTCTTCTTCCCCTTGTTTATGGCAAGGTATCACTTGTTCACTTTCCGGCCAAATCACCACCGTTAACCTCACCGGAGCTTCACTTTCCGGTAAAAGTTTCAATCTTTTCACCTTCACTTCAATACCCACTTTACAAAATCTTCTCTTACATGGAAATTCTTTCACTTCTTTCAACCTCTCTGTTTCAAAACCTTGTTCTCTTATCACTCTTGATCTTTCTTCCACCAATTTCTCAGGAACTTTTCCTTTTGAAAATTTTGCTTCTTGTTATAGTCTTAGTTACCTCAATTTGTCTAGGAATTTGATAACTTCAACAAATAATAATTTTTTAGGGTTTGGTTCTTCTTTGACTCAACTTGATATGTCTAGAAACATGTTTTCTGATGTTGATTTTGTTGTTGAAGTTGTTACAAAGTTTGAAAGTTTGGTTTATGTTAATTTTTCTGACAACAGAATCTATAGTCAAATCAGTGATTCACTTGTTCCTTCTGTGAATTTGTCAACTTTGGATTTGTCTCATAATTTGTTGTTTGGAAAATTACCCTCTAAAATTGTTGGTGATAGTGTTGAAATTTTGGATCTTTCAAGCAACAATTTTTCATTAGGGTTTTCTCAGTTTGATTTTGGGGATTGTAAGAAACTTGCTTGGTTGAGTTTATCTCACAATGTGATATCTGATTTTGAGTTTCCACAGAGTTTGAAAAATTGTCAAGTGTTGGAAAGTTTGGATCTTTCTCAAAATAAATTTAAGATGAAGATTCCTGGTGGTGTTCTTGGTGAGTTGAAGAATTTGAAGGAACTTAATTTAGGGAATAATCTTTTTTATGGAGAAATATCTAAGGAGCTTGGAAGTGTTTGTGAGAGTTTGGAAATTCTTGATCTTTCTATGAATAAGCTTTCTGGTGAGTTTCCTTTGGTTTTTGGAAAATGTTCATCTTTGAAGAGTCTTAACCTAGCTAAGAATTTTCTATATGGTAATTTTCTTGAAAATGTTGTTAGCAAACTTTCTAGTCTTAGATATCTCTCTGTGTCATTCAATAACATAACCGGAAATGTTCCTTTGTCGATTGTTGCAAATTGTACACAACTTCAGGTTCTTGACCTAAGTTCAAACGGTTTCACCGGCAATGTTCCTTCCATGTTTTGTCCTTCGAAATTGGAGAAGTTGCTTCTAGCTGATAATCACCTTTCAGGGAATGTTCCCGCAAAACTCGGCGAATGCAAGAGTTTGAGAACAATTGATTTTAGCTTCAATAATTTGAGTGGTTCAATACCTAAGGAAGTTTGGTTTTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAATAGTCTCACTGGCGAGATTCCTGAAGGAATTTGTGTCAATGGAGGGAACCTTGAAACATTGATTCTCAACAACAATTTCATTTCTGGTTCAATTCCTAAGTCTATTGCAAATTGTACCAACATGATTTGGGTTTCGCTTGCTAGTAACCGCATTACTGGAGAAATACCTGCTGGTATCGGGAATCTGAACGAACTTGCTATTCTGCAATTAGGTAACAATTCTCTCGTTGGAAAGATTCCTCCCGACATTGGAATGTGCAAGAGACTAATATGGCTGGATTTGACTAGCAATAACCTCACCGGTACTATTCCGTCCCAGCTTGCAAATCAAGCTGGATTGGTTATTCCGGGGAGTGTTTCGGGTAAGCAATTTGCATTTGTGAGAAATGAAGGTGGTACTAATTGTAGAGGCGCCGGAGGACTTGTTGAGTTTGAAGATATAAGGGTAGAGAGGCTTGAAAGTTTTCCTATGGTTCATTCTTGTCCATTAACAAGAATATATTCTGGTTATACAGTTTATACTTTTGCCACCAATGGAAGCATGATTTTCCTTGATCTTTCTTACAATTTCTTGTCAGGGACTATTCCAGAAAATTTAGGCGCAATGTCATATTTGCAGGTCTTAAATCTAGGACACAATAGGCTGAATGGAAAAATTCCAGAAAGTTTCGGTGATTTAAAAGCTCTAGGAGTGCTTGATCTGTCACATAATAGCCTTCAAGGATTCATCCCTGGATCATTACAATCTCTATCATTTCTCAGTGACTTTGATGTGTCGAATAATAACCTTAGTGGATTGATTCCTTCTGGTGGTCAGCTAACAACTTTCCCGGCATCTAGATACGCAAACAACTCCAACCTTTGTGGTGTTCCCTTACTGAAATGCGGCGCTTCAAATCACTCGGTAACTTTGCGTACGTCGAAGAAGAAGCAACCTATTGCAATTTTGATTGTCATTTCCCTCCTTTTCTTCCTCTTGTTTGTTGTTGTGGTTTCATTGGCTTTATATCGAGTTCGAAAGGCTCGGAAGAAGGATGAATTGAGGGAAAAATATGTAGAAAGTCTTCCAACATCTGGTACCAGTAGTTGGAAGCTTTCGACCTTTCCTGAGCCTCTGAGCATCAATGTCGCTACGTTCGAGAAGCCTTTGCGCAAGTTGACGTTCGCGCATCTTCTCGAGGCTACCAACGGTTTCAGCTCTGAAAGTTTGATAGGTTCGGGAGGTTTCGGTGAAGTGTATAAGGCTAAGATGAAAGATGGCAGTGTTGTTGCTATCAAGAAACTCATCCGTGTCACAGGCCAGGGAGACAGAGAGTTCATAGCCGAAATGGAAACGATTGGTAAGATTAAGCACAGGAACCTTGTTCCACTACTTGGTTACTGTAAAGTTGGAGATGAAAGGCTACTTGTGTATGAGTACATGAAATATGGAAGTTTAGAAACTGTTCTACATGAGAGGATCAAAAGTTCAAAGCTTGCTTGGGAAACAAGAAAAAAGATAGCACTAGGATCAGCAAGAGGGCTTGCATTTCTTCATCATAGTTGCATACCTCATATTATACATAGAGACATGAAGTCAAGCAATATTCTTCTCGACGAAAATTTTGAGGCTAGAGTTTCGGATTTCGGTATGGCGAGATTGGTTAATGCACTTGACACTCATCTCACAGTTAGCACACTTGCAGGAACACCAGGTTATGTACCACCTGAATACTATCAAAGTTTTCGATGCACAGCAAAAGGCGATGTTTATAGTTATGGTGTCATACTGTTAGAACTTCTATCAGGGAAGAGACCGATCGATTCGTCCGAGTTCGGAGATGATAACAATCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAAAGAAGAATTATTGAAATACTTGATCCTGATTTGGTTATACAAACATCTAGCGAAGGCGAACTTTTTCAATATTTGAGAATTGCTTTTGAATGTTTAGAGGAAAGACCGTACCGGCGTCCGACGATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAAGTTGATACAGATAATGATAGTGTTGTTGATGGTTTCTCTATGAAAGACAGTGTTATTGATGAAACATGA 3606 0.3758 MSCKFSPTRTTSVIVLHMFVSFITLTLTTSTTTTFDSTTLLLNNFKHSNIISDPKNFLSNWSLSSSPCLWQGITCSLSGQITTVNLTGASLSGKSFNLFTFTSIPTLQNLLLHGNSFTSFNLSVSKPCSLITLDLSSTNFSGTFPFENFASCYSLSYLNLSRNLITSTNNNFLGFGSSLTQLDMSRNMFSDVDFVVEVVTKFESLVYVNFSDNRIYSQISDSLVPSVNLSTLDLSHNLLFGKLPSKIVGDSVEILDLSSNNFSLGFSQFDFGDCKKLAWLSLSHNVISDFEFPQSLKNCQVLESLDLSQNKFKMKIPGGVLGELKNLKELNLGNNLFYGEISKELGSVCESLEILDLSMNKLSGEFPLVFGKCSSLKSLNLAKNFLYGNFLENVVSKLSSLRYLSVSFNNITGNVPLSIVANCTQLQVLDLSSNGFTGNVPSMFCPSKLEKLLLADNHLSGNVPAKLGECKSLRTIDFSFNNLSGSIPKEVWFLPNLSDLIMWANSLTGEIPEGICVNGGNLETLILNNNFISGSIPKSIANCTNMIWVSLASNRITGEIPAGIGNLNELAILQLGNNSLVGKIPPDIGMCKRLIWLDLTSNNLTGTIPSQLANQAGLVIPGSVSGKQFAFVRNEGGTNCRGAGGLVEFEDIRVERLESFPMVHSCPLTRIYSGYTVYTFATNGSMIFLDLSYNFLSGTIPENLGAMSYLQVLNLGHNRLNGKIPESFGDLKALGVLDLSHNSLQGFIPGSLQSLSFLSDFDVSNNNLSGLIPSGGQLTTFPASRYANNSNLCGVPLLKCGASNHSVTLRTSKKKQPIAILIVISLLFFLLFVVVVSLALYRVRKARKKDELREKYVESLPTSGTSSWKLSTFPEPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERIKSSKLAWETRKKIALGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWSKKLYRERRIIEILDPDLVIQTSSEGELFQYLRIAFECLEERPYRRPTMIQVMAMFKELQVDTDNDSVVDGFSMKDSVIDET 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00143 1201 SUPERFAMILY RNI-like 251 513 - -
Trre5g00143 1201 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515
Trre5g00143 1201 SMART serkin_6 903 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00143 1201 Pfam Leucine rich repeat N-terminal domain 42 76 IPR013210 -
Trre5g00143 1201 Pfam Protein kinase domain 904 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00143 1201 Pfam Brassinosteroid receptor island domain 617 680 IPR045381 -
Trre5g00143 1201 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 680 800 - -
Trre5g00143 1201 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 197 420 - -
Trre5g00143 1201 Gene3D Transferase(Phosphotransferase) domain 1 979 1195 - -
Trre5g00143 1201 FunFam Serine/threonine-protein kinase BRI1-like 1 624 681 - -
Trre5g00143 1201 ProSiteProfiles Protein kinase domain profile. 903 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00143 1201 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Trre5g00143 1201 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Trre5g00143 1201 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 349 1177 - -
Trre5g00143 1201 SUPERFAMILY Protein kinase-like (PK-like) 887 1182 IPR011009 -
Trre5g00143 1201 Gene3D Ribonuclease Inhibitor 169 801 IPR032675 -
Trre5g00143 1201 FunFam serine/threonine-protein kinase BRI1-like 2 864 978 - -
Trre5g00143 1201 Gene3D - 624 681 - -
Trre5g00143 1201 FunFam Brassinosteroid LRR receptor kinase 979 1180 - -
Trre5g00143 1201 ProSitePatterns Protein kinases ATP-binding region signature. 909 932 IPR017441 GO:0005524
Trre5g00143 1201 SMART LRR_typ_2 755 778 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 707 730 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 494 518 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 567 591 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 398 422 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 731 754 IPR003591 -
Trre5g00143 1201 SMART LRR_typ_2 324 348 IPR003591 -
Trre5g00143 1201 SUPERFAMILY L domain-like 44 342 - -
Trre5g00143 1201 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 421 621 - -
Trre5g00143 1201 SUPERFAMILY L domain-like 420 785 - -
Trre5g00143 1201 Gene3D Phosphorylase Kinase; domain 1 866 978 - -
Trre5g00143 1201 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1024 1036 IPR008271 GO:0004672|GO:0006468
Trre5g00143 1201 Pfam Leucine rich repeat 709 768 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00143 Trre-Chr5 833651 837256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00143 35 1200 Receptor kinase-like Gene Family AT1G55610 61.337 0.0 1432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre5g00143 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00143 - - gmx:100779072 1673.68