Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00142 ATGGCTTCTTCATCAAGCAGCGGATTAACATTCAAGCTACACCCACTCGTCATCGTTAACATCTCCGATCATTACACTAGGGTTAAATCTCAGATGAACCCTAGCCATGCTCCTCATAACAACACTGTCAACAATGGCGGCGACGGTGTCATTTCTTCTCTTCCACCGCCACGTGTCTATGGTTGTGTCATCGGTGTTCAGAAAGGTCGCACTGTTGAGATTTTCAATAGCTTTGAACTTCTCTATGATCCTTCCACCAATTCTCTTGATCGTCCTTTCCTTGAGAAGAAGCAAGAACTCTATAAGAAGGTTTTTCCACACTTCTACATATTGGGATGGTATTCAACTGGGAGTGATGCAGAGGAAGCTGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCGGTTTATGTTCTTCTAAACCCTGCTATCAATCATTCTCAGAAGGATCTCCCTGTCAGTATATTTGAAAGTGAACTGCATGTCATTGATGGGATTCCACAACTCATCTTTGTTCACTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATCTCAGTTGATCATGTTGCTCATCTAAAGCCATCTGATGGTGGTTCAGCAGCTACGCAATTGGCTGCTAACCTTACTGGTATACACAGCGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGGAAAAAGGTGAGGTTCCTCGTGAGAATTCACTATTAAGGCAAGTCTCGAGTCTCTTGAGAAGATTGCCTGCTATTGAATCTGGGAAGTTTCAAGATGATTTCTTGATGGAATACAATGACACCTTATTGATTAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCAATGAATGATTTGGTGGACAAATTCAGTACTGCGTATGATAGGCATACCAGAAGGGGTGGACGAACTGCTTTCATGTGA 957 0.4222 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPSHAPHNNTVNNGGDGVISSLPPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTNSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEEADMHIHKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVHSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGEVPRENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHTRRGGRTAFM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00142 318 Gene3D Cytidine Deaminase, domain 2 1 199 - -
Trre5g00142 318 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 137 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre5g00142 318 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 309 - -
Trre5g00142 318 Pfam Maintenance of mitochondrial structure and function 185 299 IPR024969 -
Trre5g00142 318 ProSiteProfiles MPN domain profile. 11 165 IPR037518 -
Trre5g00142 318 SMART pad1_6 10 164 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre5g00142 318 MobiDBLite consensus disorder prediction 30 49 - -
Trre5g00142 318 CDD MPN_CSN6 9 314 IPR033859 GO:0000338|GO:0008180
Trre5g00142 318 MobiDBLite consensus disorder prediction 30 50 - -
Trre5g00142 318 FunFam COP9 signalosome subunit 6 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00142 Trre-Chr5 816031 820841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00142 2 269 Eukaryotic Initiation Factors Gene Family AT2G39990 22.344 2.98e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00142 K12179 - gmx:100797079 582.022