Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00139 ATGGCGATGCGTGATCTTATCACGGGTGCTACTTCTTGTCCCGACCCTTCTTCTTCTTCATCTTCCTCTCAAAACCCTCTCGGTTCTCTCGCTAACGCTCTTCTCGGTTCTTCCTCTAAAACTCAGGAGAGGTTGAAGGAAATTCCTACATCCACTTCTACTCCTTCTGCATCATCATCGCAATTCTACTCTCAACCTCTTACTCACCTTCCTGGTTCTGAATTCGATAAACCTTTTCTCGATGCTAATTCTCAGGGCTCGGAGTTTTTGAATAGGTTTAGGTCTGCGGGTGCGGGTGGGTTTGAGGAAACGTGGAATGAGATACAACATGACGGAAATCAACTCCGGCTCTATGATGGCAGGGGACAGCTTCCACCACAGCTTCATCAACCTGCACTGGACGGAACACCACAAAGAGTTCTATCTACCTTTTTGCACTCATTTCTTGATAGCAGTCGTGGTGGAATACCTTTTCATCCAGCCCCTCTTCCAGTATTGGGTTTATCTGAAGGTGATAAACAGTGTATACGTGACCGTAGCAGCATAATGGCCAGACATCTCTTTGCAGATAAAAGCGAAGAATTTATCCATGCCCAAGTCAATGCTCTTTTGTCCTCTCTAGATATTGACAGTAATGTCCGTGGCAAGGGACCTATGCCTGAAAGGTTTAGGGAGCTTGATGATTATTGGAATGAGTCTCAAGGCAACCAGATGCATGGTGCTCATGCTGCAGACGGATGGATTTCCGAATTCAGTCAAAATAGGGAAAGATATGATAATCCTGATGCATGGGCTAACTCATTTGAGCAACAGCATGGTGTTAATGGTTGGGCCTCTGAATTTGAACATTCTCAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGTCAAACATTGCTGCAATGGAGCAGACTCGTATGCTTGCAAATACATTGGCCCAGAATGCTGACCCTAAATTTCAGAACTCAAAGTTCCTTCAATTTGTATCAAAGATGAGCCGCGGTGAGTTAATTATCGATGACAATCAAGTTAAAGAGACTGCATTACCTGCACCCGGAGATTGGGCATCAGAATATCAGCAGCAGTATAATCGTGGTGATGCATGGGCCGGTGAATTCTTAAATAATAAGGCTTTTTCTGGAGTTGGACCTGAAATGTGGGCGAATGAATTTGCAAATGAAAGACAACAACAAAATGGAGCAGTTGATGACCAGTGGGTTGATGAATTCTCAAAGTTGCATGTTAATGACTGGGCAGATGAATTTGGTCAGCAGGTTGGTGAAGGAGCCTTTGGGGAAGGCTCTTCAGATAATTGGGCTCAGGCATATGATGAGTTCCTGAATGAGCAAGTTGCTGCCAAGCAACGGTCAGATAGCTCAAGGGGCGTGTATGTGTTTTCAGATTTAAATCCTTATGTTGGTCATCCAAATCCACTAAAAGAAGGCCAAGATCTCTTCAGAAAAGGGCTTTTAAGTGAAGCGGTTCTAGCACTAGAAGCTGAAGTCTTGAAAAACCCTGAAAATGCCGAAGGATGGAGACTACTTGGAATAGCCCACGCAGAAAATGATGATGATCAACAGGCGATTGCAGCGATGATGCGTGCACAGGAGGCTGATCCAACAAACTTGGAGGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAACTGGAGCAAAATGCTGCTTTAAAGTATCTATTTGGATGGTTACGGAATCACCCAAAATATGGAACAATTGCCCCACCTGAGATGTCTGATTCGTTGTACTATGCTGATGTTGCTAGATTATTCAACGAGGCAGCTGTAATCTCACCTGAGGATGCAGATGTCCACATAGTTCTTGGGGTTCTGTACAACTTATCCAGAGAATATGACAAAGCTATTGCTGCTTTTGAACGAGCATTGAAACTTAAGCCACATGATTACTCTCTCTGGAACAAGCTTGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCGATATCGGCTTACCAACAGGCACTTGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATTAGTTATGCAAACCAGGGCATGTATGACGAGTCTATTCGTTATTATGTTCGAGCGCTTGCCATGAATCCAAAAGCAGATAATGCATGGCAATATTTGAGAATTTCATTAAGTTGTGCTTCTAGGAATGACATGTTGGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAGAAGGAGTTCCCTCTACAGTAA 2247 0.4361 MAMRDLITGATSCPDPSSSSSSSQNPLGSLANALLGSSSKTQERLKEIPTSTSTPSASSSQFYSQPLTHLPGSEFDKPFLDANSQGSEFLNRFRSAGAGGFEETWNEIQHDGNQLRLYDGRGQLPPQLHQPALDGTPQRVLSTFLHSFLDSSRGGIPFHPAPLPVLGLSEGDKQCIRDRSSIMARHLFADKSEEFIHAQVNALLSSLDIDSNVRGKGPMPERFRELDDYWNESQGNQMHGAHAADGWISEFSQNRERYDNPDAWANSFEQQHGVNGWASEFEHSQLSSVDQMRGMNMSNIAAMEQTRMLANTLAQNADPKFQNSKFLQFVSKMSRGELIIDDNQVKETALPAPGDWASEYQQQYNRGDAWAGEFLNNKAFSGVGPEMWANEFANERQQQNGAVDDQWVDEFSKLHVNDWADEFGQQVGEGAFGEGSSDNWAQAYDEFLNEQVAAKQRSDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQNAALKYLFGWLRNHPKYGTIAPPEMSDSLYYADVARLFNEAAVISPEDADVHIVLGVLYNLSREYDKAIAAFERALKLKPHDYSLWNKLGATQANSVQSADAISAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00139 748 ProSiteProfiles TPR repeat profile. 510 543 IPR019734 GO:0005515
Trre5g00139 748 ProSiteProfiles TPR repeat profile. 609 642 IPR019734 GO:0005515
Trre5g00139 748 SUPERFAMILY TPR-like 461 747 IPR011990 GO:0005515
Trre5g00139 748 FunFam Peroxisome biogenesis protein 5 459 747 - -
Trre5g00139 748 Pfam Tetratricopeptide repeat 480 542 - -
Trre5g00139 748 MobiDBLite consensus disorder prediction 11 67 - -
Trre5g00139 748 ProSiteProfiles TPR repeat region circular profile. 609 642 - -
Trre5g00139 748 ProSiteProfiles TPR repeat profile. 643 676 IPR019734 GO:0005515
Trre5g00139 748 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 745 IPR024111 -
Trre5g00139 748 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Trre5g00139 748 Gene3D Tetratricopeptide repeat domain 459 748 IPR011990 GO:0005515
Trre5g00139 748 SMART tpr_5 643 676 IPR019734 GO:0005515
Trre5g00139 748 SMART tpr_5 677 710 IPR019734 GO:0005515
Trre5g00139 748 SMART tpr_5 609 642 IPR019734 GO:0005515
Trre5g00139 748 SMART tpr_5 510 543 IPR019734 GO:0005515
Trre5g00139 748 ProSiteProfiles TPR repeat region circular profile. 677 709 - -
Trre5g00139 748 Pfam Tetratricopeptide repeat 609 642 IPR001440 GO:0005515
Trre5g00139 748 Pfam Tetratricopeptide repeat 678 709 IPR001440 GO:0005515
Trre5g00139 748 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00139 Trre-Chr5 795184 804421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00139 622 740 Glycosyltransferase AT3G04240 31.092 7.32e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00139 K13342 - gmx:100527272 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00139 5 795184 804421 Trre5g00139 5 795184 804421 ECH