Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00130 ATGGCCAACAAACATCAAGGCAACAATTCTGTCTTGAAACTTTGTTGTTCATCAAACCGTGCTATAACCTTAATACAAAAAGTGATTGCAGAAATTATTGGTACATATTTTCTAGTCTTTGCCGGTTGTGGTGCTGTAGCAGTTAATAAAATCTATGGCTCAATCACTTTCCCAGGAATTTGTATCACTTGGGGTTTGATTGTAACCGTCATGTGTTACTCTGTTGGTCATATCTCCGGCGGCCTATTCAACCCGGCCGTTGCCATAACTTGGGCTATCTTTCGCCGAATAACAGTTATAGAAGCTCCACTTTATATCGCTGCTGAGTTACTTGGATCGACGTTAGCAAGTGTCACATTATCTCTAATGTTTGATATAACACCAAAATCTTATTTTGGAACCGTACCTGTTGGATCGGACGGTCAATCATTAGTTGTCGAAATAATTATAAGTTTTTTATTAATGTTTGTGATTTCAGCTGTTACAACAGATGATAGAGCTGTTGATGACTCCGCGAGTGTCGCGGTTGGGATGACAATAATGTTGAATCTTTTTATTGCTGGACCGGTATCAGGAGCATCGATGAATCCAGCAAGAAGTATTGGTCCTGCAATTGTGGTACATATTTATAAAGGGTTATGGATATATATAGTTGGTCCAATTGTTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCGGTTTACAAGCCACCTTCAGAGTTATCAGCAGATAAGTCATCACCACCATCAGAATTAACAAAAGATAAATCATCTTCAGAGTTAATTACACCAGAACAACCATTGAGGAGCATAGTTGTAGATTGA 834 0.3885 MANKHQGNNSVLKLCCSSNRAITLIQKVIAEIIGTYFLVFAGCGAVAVNKIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVAITWAIFRRITVIEAPLYIAAELLGSTLASVTLSLMFDITPKSYFGTVPVGSDGQSLVVEIIISFLLMFVISAVTTDDRAVDDSASVAVGMTIMLNLFIAGPVSGASMNPARSIGPAIVVHIYKGLWIYIVGPIVGAIAGALAYNFLRSVYKPPSELSADKSSPPSELTKDKSSSELITPEQPLRSIVVD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00130 277 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Trre5g00130 277 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 SUPERFAMILY Aquaporin-like 22 241 IPR023271 -
Trre5g00130 277 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g00130 277 MobiDBLite consensus disorder prediction 246 268 - -
Trre5g00130 277 PANTHER AQUAPORIN NIP2-1 10 248 IPR034294 -
Trre5g00130 277 MobiDBLite consensus disorder prediction 241 277 - -
Trre5g00130 277 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00130 Trre-Chr5 731597 732430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00130 16 262 Major Intrinsic Protein MIP AT5G37820 62.500 5.27e-109 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00130 K09874 - gmx:100791338 353.214