Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00128 ATGGCAACTAAGTTAACCCTTCTCTTCCTTTTCTCAACTCTCCTCACAATTGTAACTTCAACACCAGCAAGTTTCATCAAATCCTCATGTAGCACAACATCATACCCAACACTATGTGTTGAATCACTCTCTAGCTATGCATCAACAATCCAACAAGATCCTCACCAATTAGTCCAAACAGCTTTATCACTTAGCCTCAACAAAACTCAATCTACCAAAAGCTTTGTTACAAAGTGCAAAAGTTTTAAGAATCTTAAACCAAGAGAATATGCTGCTCTTCATGATTGTGTTGAAGAAATTACTGATAGTGTTGATAGGCTTAGCCGTTCATTAAAAGAGCTTAAACTTTGCAAGATTAGTGGTCAAGATTTCAATTGGCATATAAGTAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGAAAGCACTTGTAGTGATGGATTTGGTGGAAAAGCACTTGATGGAAAATTGAAAACATCTATTAGATCTAGAATGGTTAATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTTATCAATCAATATGCTACTAATCACTAG 564 0.3582 MATKLTLLFLFSTLLTIVTSTPASFIKSSCSTTSYPTLCVESLSSYASTIQQDPHQLVQTALSLSLNKTQSTKSFVTKCKSFKNLKPREYAALHDCVEEITDSVDRLSRSLKELKLCKISGQDFNWHISNVETWVSSALTDESTCSDGFGGKALDGKLKTSIRSRMVNVAQVTSNALSLINQYATNH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00128 187 SMART PMEI_2 21 179 IPR006501 GO:0004857
Trre5g00128 187 FunFam Pectin methylesterase inhibitor 1 21 183 - -
Trre5g00128 187 Pfam Plant invertase/pectin methylesterase inhibitor 24 179 IPR006501 GO:0004857
Trre5g00128 187 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 183 IPR035513 -
Trre5g00128 187 NCBIfam pectinesterase inhibitor domain 6 183 IPR006501 GO:0004857
Trre5g00128 187 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 183 IPR035513 -
Trre5g00128 187 CDD PMEI-like_3 28 185 - -
Trre5g00128 187 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00128 Trre-Chr5 708344 708907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00128 24 180 Carbohydrate Esterase AT3G14310 29.747 4.05e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00128 - - lja:Lj0g3v0070759.1 292.737