Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g00127 | ATGAAAGCCAACACTTTTGCAAGTTTTTCTTCCAAAAATGTTCTCACATTTGCAATTTTCATCTTCCTAGCAATATCTAGCATCACTTTAGCATGCGATGAAAATTCTAAAATCCCTACCAATTCCACCAAAACCAACATTAACTACACTTACACTAGCCCCTCCAATTCCACCCAAAAAAATAATTTCAAAACCTACATAAAAAATTCATGCAATTCAACCACATATCCATATATATGCTACAAATCCTTATCTCCATATGCTTTAACTATTGAAAAAGATCCTTTAAAGTTATGCAACATCTCTCTTTCGGTTGCATTAAAGGCGGCTCGCGGCGCATCCTCGGCCGTATCGAAGCTTCTATACAACAATGACAATAAATTGTCAAGCATTGGTGAAGAAGTTGTACAAGATTGCTTTAGCAATTTGAAGGATTCAATAGAACAATTGCAAGATTCTCTTGATGCCATGATAAATTTGGATTCTGATTTTGATAGAGAATTTCAAATTAGTAACATAAAGACTTGGGTTAGTTCTGCTATTACTAATGATCAAACTTGCTATGATGGATTTGATGAGATGAATGTAGATTCCACAATTAGGGACAAAATAAGAAGCAAAGTTTTGAATGTGGCAAGGAAGACTAGCAATGCTTTGTATTTTATCAACAATAACATATATTAA | 684 | 0.3363 | MKANTFASFSSKNVLTFAIFIFLAISSITLACDENSKIPTNSTKTNINYTYTSPSNSTQKNNFKTYIKNSCNSTTYPYICYKSLSPYALTIEKDPLKLCNISLSVALKAARGASSAVSKLLYNNDNKLSSIGEEVVQDCFSNLKDSIEQLQDSLDAMINLDSDFDREFQISNIKTWVSSAITNDQTCYDGFDEMNVDSTIRDKIRSKVLNVARKTSNALYFINNNIY | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g00127 | 227 | CDD | PMEI-like_3 | 70 | 224 | - | - | |
| Trre5g00127 | 227 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | - | - | |
| Trre5g00127 | 227 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 20 | 219 | - | - | |
| Trre5g00127 | 227 | NCBIfam | pectinesterase inhibitor domain | 52 | 224 | IPR006501 | GO:0004857 | |
| Trre5g00127 | 227 | SMART | PMEI_2 | 62 | 221 | IPR006501 | GO:0004857 | |
| Trre5g00127 | 227 | FunFam | Pectinesterase | 64 | 225 | - | - | |
| Trre5g00127 | 227 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 65 | 224 | IPR035513 | - | |
| Trre5g00127 | 227 | Coils | Coil | 140 | 160 | - | - | |
| Trre5g00127 | 227 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 63 | 225 | IPR035513 | - | |
| Trre5g00127 | 227 | Pfam | Plant invertase/pectin methylesterase inhibitor | 66 | 219 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g00127 | Trre-Chr5 | 701512 | 702195 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre5g00127 | 67 | 224 | Carbohydrate Esterase | AT3G14310 | 26.087 | 3.22e-13 | 66.6 |