Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00126 ATGCTTGTTCAATTAGCATTAAAACAAGCTCTTATCATGCAAAAAGAAGCACAAGAAAATTCTTATCAAAATTCATCAGTGCATAAAGTGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAACCGTACACTTGAAGGTTTAAACAATTCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGAGTTCAATTTCATTGTGCAAACCAATGTCATTGAGATGATAAGGAACATCTTAGCCATCAATATGTATTTCATGAAACACAATAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGAATGAGAAGAAGCTTTTACAAACTAATTCTCCATTAAAGTTCAACCTTGTGGTTGCAAAAGATGGTTCTGGAAATTTTAAGACTGTACAAGCTGCTCTTGATGCTGCTGCTAAAAGAAAATATAAGACAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCTGGTATTGATGGACTTCACTTTATTGCACGTGACATAACCTTCCAAAACACTGCCGGTCCACACAAGGGTCAAGCTGTAGCGCTTCGATCAGCCTCGGATCTCTCGGTATTCTACCGTTGTGCCATATCAGGTTACCAAGACACCCTCATGACTCACGCACAACGTCAATTTTACCGACAATGCTACATCTATGGCACCATAGACTTCATCTTTGGCAACGCCGCAGTGGTATTTCAAAATTGTAAAATTTTCGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCGTTCCAAAACACCGGAATTTCATTCCACAATTGTCAAATTATGGCTGCATCCGATCTAAAGCCTGTCGTCGACAAGTACAAAACCTTCTTAGGCCGACCTTGGCAACAATACTCGAGAGTTATGATAATGAAAACTTTTATGGATACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACAGATTTTGCTCAAGACACATTGTATTATGGTGAGTACGAAAACTATGGACCTGGTTCATCAACAGAAAATAGAGTGAAATGGCCAGGTTATCATGTGATAACAAGACCAAATGAAGCTGCAAAATTTACAGTTAATGGACTCCTTGCTGGCCCAACATGGTTGGCCACAACTACTGTGCCATTTACTTCTGGGCTTTGA 1380 0.3884 MLVQLALKQALIMQKEAQENSYQNSSVHKVVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQEFNFIVQTNVIEMIRNILAINMYFMKHNKETKEGLFPSWFSRNEKKLLQTNSPLKFNLVVAKDGSGNFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTIDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIMAASDLKPVVDKYKTFLGRPWQQYSRVMIMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTENRVKWPGYHVITRPNEAAKFTVNGLLAGPTWLATTTVPFTSGL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00126 459 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 110 IPR035513 -
Trre5g00126 459 Gene3D - 141 459 IPR012334 -
Trre5g00126 459 Pfam Plant invertase/pectin methylesterase inhibitor 4 109 IPR006501 GO:0004857
Trre5g00126 459 CDD PMEI-like_3 2 115 - -
Trre5g00126 459 SUPERFAMILY Pectin lyase-like 143 458 IPR011050 -
Trre5g00126 459 Pfam Pectinesterase 146 444 IPR000070 GO:0030599|GO:0042545
Trre5g00126 459 ProSitePatterns Pectinesterase signature 2. 291 300 IPR033131 -
Trre5g00126 459 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
Trre5g00126 459 PANTHER PECTINESTERASE 7 449 - -
Trre5g00126 459 FunFam Pectinesterase 140 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00126 Trre-Chr5 696044 697970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00126 1 459 Carbohydrate Esterase AT5G51490 56.780 0.0 555