Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00125 ATGGCAATCATTGGAAAAATATTTTTCATGATATTATTTTTATCTTCAATTTTCTCAATAGCCTCATCAAGAAAAGGACCTTCCTCAAACAACATAGATTGGTGGTGCAACCAAACACCACATCCTCAACCATGCAAACACTACATAACTCAAATGAATAATAATTTCAAAATCAAACATAGAGTTGAATTTAGAGGAATGCTTGTTCAATTAGCATTAAAACAAGCTCTTATCATGCAAAAAGAAGCACAAGAAAATTCTTATCAAAATTCATCAGTGCATAAAGTGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAACCGTACACTTGAAGGTTTAAACAATTCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGAGTTCAATTTCATTGTGCAAACCAATGTCATTGAGATGATAAGGAACATCTTAGCCATCAATATGTATTTCATGAAACACAATAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGAATGAGAAGAAGCTTTTACAAACTAATTCTCCATTAAAGTTCAACCTTGTGGTTGCAAAAGATGGTTCTGGAAATTTTAAGACTGTACAAGCTGCTCTTGATGCTGCTGCTAAAAGAAAATATAAGACAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCTGGTATTGATGGACTTCACTTTATTGCACGTGACATAACCTTCCAAAACACTGCCGGTCCACACAAGGGTCAAGCTGTAGCGCTTCGATCAGCCTCGGATCTCTCGGTATTCTACCGTTGTGCCATATCAGGTTACCAAGACACCCTCATGACTCACGCACAACGTCAATTTTACCGACAATGCTACATCTATGGCACCATAGACTTCATCTTTGGCAACGCCGCAGTGGTATTTCAAAATTGTAAAATTTTCGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCGTTCCAAAACACCGGAATTTCATTCCACAATTGTCAAATTATGGCTGCATCCGATCTAAAGCCTGTCGTCGACAAGTACAAAACCTTCTTAGGCCGACCTTGGCAACAATACTCGAGAGTTATGATAATGAAAACTTTTATGGATACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACAGATTTTGCTCAAGACACATTGTATTATGGTGAGTACGAAAACTATGGACCTGGTTCATCAACAGAAAATAGAGTGAAATGGCCAGGTTATCATGTGATAACAAGACCAAATGAAGCTGCAAAATTTACAGTTAATGGACTCCTTGCTGGCCCAACATGGTTGGCCACAACTACTGTGCCATTTACTTCTGGGCTTTGA 1578 0.379 MAIIGKIFFMILFLSSIFSIASSRKGPSSNNIDWWCNQTPHPQPCKHYITQMNNNFKIKHRVEFRGMLVQLALKQALIMQKEAQENSYQNSSVHKVVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQEFNFIVQTNVIEMIRNILAINMYFMKHNKETKEGLFPSWFSRNEKKLLQTNSPLKFNLVVAKDGSGNFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTIDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIMAASDLKPVVDKYKTFLGRPWQQYSRVMIMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTENRVKWPGYHVITRPNEAAKFTVNGLLAGPTWLATTTVPFTSGL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00125 525 PANTHER PECTINESTERASE 14 515 - -
Trre5g00125 525 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Trre5g00125 525 CDD PMEI-like_3 34 181 - -
Trre5g00125 525 Pfam Pectinesterase 212 510 IPR000070 GO:0030599|GO:0042545
Trre5g00125 525 NCBIfam pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Trre5g00125 525 SMART PMEI_2 27 175 IPR006501 GO:0004857
Trre5g00125 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Trre5g00125 525 SUPERFAMILY Pectin lyase-like 209 524 IPR011050 -
Trre5g00125 525 Gene3D - 207 525 IPR012334 -
Trre5g00125 525 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Trre5g00125 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Trre5g00125 525 FunFam Pectinesterase 206 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00125 Trre-Chr5 696044 698168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00125 26 525 Carbohydrate Esterase AT3G47400 56.286 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00125 K01051 - gmx:100806133 792.341