Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00119 ATGGAACTGAAAGGGAATCATACTCTCCTTGGTGAAACTGCAACCTTAACAAGGACAAGATCAAGGCTTGGGGCAGGCACGTCTTCGAGTCTGTCATGCTCTCCTACAGCCACTTCAACTTTTCTGCACGGTCCGTCCTTGACAATTCCAAAGAAGAAGGTAGGAATTCTCGATGATGTTCGTTCTAACGGTTGGCTTGATGCAATGAGATCATCTTCTCCTACTCGCAAGAAAATATCTATGGATGTTGGTCATAGCGTTGCGTCTTCTGAAGCTGATGCTGCTTATTTAACCTGGCTGCTAGAGTTTCCATCAGCACTTTCATCCTTTGAGCAAATTACTAACTTTGCAAAAGGAAAGAAAATAGCATTGTTTCTGGATTATGACGGGACTCTTTCGCCGATTGTTGACAATCCTGACCGTGCTTTCATGTCCGACAACATGCGTGCTGCTGTTAAAAATGCGGCCGAAGATTTTCCGACCGCAATAATTAGTGGAAGAAGTCGTGAAAAGGTATATGAATTTGTCGGAATAGCTGATCTCTATTATGCTGGTAGTCATGGAATGGACATAATTGGTCCTCTTAGACAATCTGTATCTGATAATCACCCTAACTGCATTAGGTCTACTGATAAGAAGGGCAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCTATGATTGACAAGGTACGTAGGTTGTTCATTGAGTGTACAAAAGACATCAAAGGAGCAAAAGTTGAGAACAATAAGTTTTGTGTCTCTGTACATTATCGTAACGTAGACGAGGAGAATTGGGATATGGTGGCACAACGCGTTTATGATATTATGAAAGACTATCCAAATTTGCGATTAACTCACGGTCGGAAGGTTTTAGAGGTCCGACCGGTGATTGACTGGGACAAGGGAAAAGCTGTTACATTTTTGCTCGAGTCACTTGGTCTTAACGATGACGATGATGTGCTAGCTATATATATTGGTGACGATCGGACAGATGAAGACGCATTTAAGGCTTTGAGCGAGGTTAATAAAGGTTTTGGAATCTTAGTGTCTTCGGCTCCTAAAGAAAGCAGCGCGGCTTACTCTCTTTCTGATCCTTCAGAGGTGATGGAATTTCTCAAGTCACTTGTGGAATGGAAATCAAGCTCTATAGTATAA 1164 0.4218 MELKGNHTLLGETATLTRTRSRLGAGTSSSLSCSPTATSTFLHGPSLTIPKKKVGILDDVRSNGWLDAMRSSSPTRKKISMDVGHSVASSEADAAYLTWLLEFPSALSSFEQITNFAKGKKIALFLDYDGTLSPIVDNPDRAFMSDNMRAAVKNAAEDFPTAIISGRSREKVYEFVGIADLYYAGSHGMDIIGPLRQSVSDNHPNCIRSTDKKGKEVNLFQPAAEFLPMIDKVRRLFIECTKDIKGAKVENNKFCVSVHYRNVDEENWDMVAQRVYDIMKDYPNLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDDDVLAIYIGDDRTDEDAFKALSEVNKGFGILVSSAPKESSAAYSLSDPSEVMEFLKSLVEWKSSSIV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00119 387 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Trre5g00119 387 Gene3D - 122 218 IPR023214 -
Trre5g00119 387 Gene3D - 222 386 IPR023214 -
Trre5g00119 387 Pfam Trehalose-phosphatase 125 369 IPR003337 GO:0003824|GO:0005992
Trre5g00119 387 NCBIfam HAD-IIB family hydrolase 124 341 IPR006379 -
Trre5g00119 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Trre5g00119 387 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 40 385 IPR044651 GO:0004805|GO:0005992
Trre5g00119 387 FunFam Trehalose 6-phosphate phosphatase 229 387 - -
Trre5g00119 387 SUPERFAMILY HAD-like 123 380 IPR036412 -
Trre5g00119 387 CDD HAD_TPP 123 373 - -
Trre5g00119 387 NCBIfam trehalose-phosphatase 119 379 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00119 Trre-Chr5 668655 671358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00119 116 378 Trehalose Biosynthesis Gene Families AT1G70290 26.429 1.58e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00119 K01087 - gmx:100819495 575.089