Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00111 ATGGAGAACAATGGTAGAGTATGCCCTATTTGTGACAAGTTATTTTCTAATGGGAAAGCTTTGGGAGGGCATATAAGATCACACTTAGCTAAATTACCGGTCCCTCCAAAACCCTCAATCAATAGCCAAGTAGTTGAATACTCAACCGAGACACTCAATCATTCAACTCACTTTAAATCTTCATCTTCCTCACCAACTGCTAATGCAAGAAGTGACCCTATACGCAATTTTCGATCTTTGAAAAGGAACTTTTGTTATGCTAGGGATAGTACGTTGGCGTTTTATCCAAAAATTCCAACTGGAAAAAGATCGAAACGCAAACGTAAACAATTTATTGTTTCTAAGGAAAAAGAAGATATTACACAATTTAGTGAGGCTAAAGAAAATGCAGAGAATACACAATGTAGATTTGTGTATAATAATAACGATATTGAAGCTATGGGAACATTATTTATTATGAACAGGAAAGAATGGCAACAAATTAAGAAGAAATACTATAGTGAAGAAGTTGGTCGAAGTGGAAACAAAGATGATGTTGCAAATGGTGAAATGAATATCTGA 561 0.3476 MENNGRVCPICDKLFSNGKALGGHIRSHLAKLPVPPKPSINSQVVEYSTETLNHSTHFKSSSSSPTANARSDPIRNFRSLKRNFCYARDSTLAFYPKIPTGKRSKRKRKQFIVSKEKEDITQFSEAKENAENTQCRFVYNNNDIEAMGTLFIMNRKEWQQIKKKYYSEEVGRSGNKDDVANGEMNI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00111 186 Pfam C2H2-type zinc finger 7 30 - -
Trre5g00111 186 Coils Coil 113 133 - -
Trre5g00111 186 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 176 IPR044303 GO:0006355
Trre5g00111 186 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Trre5g00111 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00111 Trre-Chr5 607332 607892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00111 8 38 C2H2 Transcription Factor Family AT1G02030 54.839 4.39e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g00111 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00111 - - tpra:123915412 239.58