Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00104 ATGGATAGGATTCAAGAGAGAGATGAAAGTAGAAAAACTCGACATTCATCGTCTTCGGTTGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTCAACAAATTTGTTCCTGAGGGAATGATTGTCTTCAAGTTGATACATGTTCATGCTGGTATAGTAGGAGTTCCCACACCAATGGGAAATTATCTCCCAATTTCACAAGTGCGTAATGATATAGCGGCTGCTTACAGACAAGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCTTTTAAGAGAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATATGGCATCTGCAGTGGCGGAAGAAATAACTAAGGATGGAATAACCAAATTGGTTGTTGGAGCTTCATCAGGTGGCTTATTTAAAAGTAAACATAAGGGTATGTCTGCAAAAATCTCAGTTTGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCTAAAGGAAAATTGTCTATACGGCCATCGGATATGCAGTTTGATGAAAGTATTACCGATGACGCAAGTGAAATCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCTTCTACCACTCAGACAGATTCTGGCTCGGTTGCATCATATGCTGCTTTACATTCATCTTCCTTGGCAACACAGCGATTTCAAGCTCTCTCAAGTATGAATCAGAACCTTCTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAACTTCTGCTAGAAACTCAGATTTTGACCGTGGTTTGAGTCGGGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGATTTATGATCAAAATTCTTTAAAGGATACGCCACTAGCTTCTAAACTTGCGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATCGATGCATCACGGAAGCTAAGTGAACTAAGCAAGAGGAGATCAGGGGAATCGATGAAAATGAAGGAGATTATTGCTAAGGAGGAAGTGGCTAAAGAATTAGCAAGACAAGAAATAGAGAAATATGAAGCTGCAGCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTGAAAGCTATTCGTGCTGCCAAAGATAAAGAAAAGCTAGAAGATGCTCTGAGTGGTTCCACACCCCAGTACCGAAAGTTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAGGATCTTAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACATTGCATCATACAACTGTTGCTGTTAAAGTTCTCCACTCTCCCGGAATCAGCCAAAACAAGCAATTCCAGCAAGAGTTGGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCGGATCATGGATGCCTTGTGTATGAATACATGGAAAATGCAAAACCAGCAACAGCAATTACTCATGTGGTTGAAACAGCAATCGAGGATGGTAACTTAACAGATATATTAGATACAAAGGCAGGGTCATGGCCATTTCAAGAAACATTAGACTTAGCTCGATTAGCTTTGAGTTGTGCGGAGCTTCGGCGTAGAGACCGGCCTGATTTGTTAGATCACGTGCTTCCTACATTAGAGAAGTTAAAAGAAGTTGCCGATAGGGCTCATTATTCCGCTTCAATGGCTACCCTTAAACCCAAAGCTCCAAACCATTTTATCTGCCCTATACTTCAGGATGTGATGGATGACCCTTGTGTTGCCGCAGATGGATATACATACGATCGAAAAGCAATAGAAAAATGGCTTGAAGAGAATGAGAAGTCACCAATGACAAACATGGCTTTGCCTCATAAGATTCTAATTCCTAATTACACACTTCTATCAGCAATTTTGGAATGGAAATCAAAAGAAATATGA 2061 0.4013 MDRIQERDESRKTRHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIVFKLIHVHAGIVGVPTPMGNYLPISQVRNDIAAAYRQEVEWQTNQMLLPFKRMCEQRKVHVDVVVIESDDMASAVAEEITKDGITKLVVGASSGGLFKSKHKGMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQFDESITDDASEISFSSSSSSNYTSSTTQTDSGSVASYAALHSSSLATQRFQALSSMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATTSARNSDFDRGLSRASSFRSIVSDTDTWIYDQNSLKDTPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAKELARQEIEKYEAAAREAAYLKECAEREASERKETELKAIRAAKDKEKLEDALSGSTPQYRKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSPGISQNKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENAKPATAITHVVETAIEDGNLTDILDTKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMATLKPKAPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENEKSPMTNMALPHKILIPNYTLLSAILEWKSKEI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00104 686 ProSiteProfiles U-box domain profile. 615 686 IPR003613 GO:0004842|GO:0016567
Trre5g00104 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 686 IPR013083 -
Trre5g00104 686 PANTHER OS02G0152300 PROTEIN 20 528 - -
Trre5g00104 686 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Trre5g00104 686 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 147 - -
Trre5g00104 686 Coils Coil 410 430 - -
Trre5g00104 686 Pfam U-box domain 616 683 IPR003613 GO:0004842|GO:0016567
Trre5g00104 686 Gene3D Phosphorylase Kinase; domain 1 431 525 - -
Trre5g00104 686 SMART Ubox_2 619 681 IPR003613 GO:0004842|GO:0016567
Trre5g00104 686 CDD RING-Ubox_WDSUB1-like 617 671 - -
Trre5g00104 686 ProSiteProfiles Protein kinase domain profile. 453 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00104 686 CDD STK_N 20 172 - -
Trre5g00104 686 Gene3D HUPs 10 150 IPR014729 -
Trre5g00104 686 Pfam Protein tyrosine and serine/threonine kinase 458 530 IPR001245 GO:0004672|GO:0006468
Trre5g00104 686 Coils Coil 372 406 - -
Trre5g00104 686 SUPERFAMILY RING/U-box 611 684 - -
Trre5g00104 686 MobiDBLite consensus disorder prediction 243 274 - -
Trre5g00104 686 SUPERFAMILY Protein kinase-like (PK-like) 435 528 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00104 Trre-Chr5 564895 568561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00104 529 683 U-box Gene Family AT4G25160 58.974 2.09e-54 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre5g00104 PK_Tyr_Ser-Thr 5.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00104 - - gsj:114409387 756.133