Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00103 ATGGATAGGATTCAAGAGGCAGATGAAAATAATAAAAATTCGGTTGTTGCTTTAGCAATCAAGGGTAATAAGAAAAGCAAATATGTTGTACAATGGGCACTTGATAAATTTGTTCATGAAGGGATAAGTATTTTCAAGCTTATTCATGTTAGAGCTGTTATAAATGGAGTTCCTACACCAATGGGAGATGTGCTTCCTATTTCACAAGTGCGAAATGATGTAGCAAATGCTTTCAGAAGGGAAGTGGAGTGGCGAACAAATCAAATGCTTCTACCTTTTAAGAGTTTGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGCAGTGATTGAATCAGATGATGTAGCAACTGCAGTAGCAGAGGAAGTATCTAAGAATGTTATTACCAAACTTGTTCTTGGAGCTTCATCTTCTGGTATATTTAAAAGCAAACATAAGGGTATGTCTGCGAAAATATCAGTATGCGCTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAGGAAAATTGTCCATACGGCAGTCAGACATGCAGACTGACGGAAACATTGTAGATGATACCACCAGTGAAACCAGTTTTTCGTCGAGCAGCTCATCAAACTACACCTCCACCTCTCACTCTCAGACAGATTTTGGTTCAGTTGCATCATCTGCTGCTTTACATTCCTATCCCCTGGCAACACGACGACATAAAGCTCTCTCGAGTACAGATCAGACCCTTCTAAGCACAAGTCCTAATTTAAGCGAAACTACTCATTTTAGAGGCCAATCTCTAGATCTTGGGAGAAAAATTGCTGATAAAAACTCAGATATTGATCATGCTCTAAGCCAGGCCTCTAGTGGCGGAAGCATTTCAGATACCGAGTCTTCCATTTACGGTCAAAACTATGCGAAGTATGTGCCACAGGGTACTAAACTTCCAACACCAAATAGACAGGAAAACTATAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCACAAGGAATGCATGCAGTAGCTCAAACTGAGAACATTGATGCATCACAAAAGCTGAATGAACTAACCAAGAGAAGATCAGAAGAATCCATGAAAATGAAGGAGATTGTTGCTAACGAGGAGATGGCTGAGGAATTAGCAAATCAAGAAAGAGAGAAATATGAAGCTGCAGCAAGAGAAGCCGAATATCTGAAACAACGTGCTGCAAGAGAAGCTGCAGAAAGAAAAGAAGCAGAGTTAAAAGCTATTTATGCTGCCAAAGAGAAAGAAAAGCTTGAGGGTGCACTGAGTGGTTCCACACCACAGTACCGAATATTTACGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAAAATTGGAATGGGTGCATATGGAGTGGTATATAAGTGCACTTTGCATTACACAACTGTTGCTGTTAAAGTTCTTCACTCTAATGGAAACTGTCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATATTGAGCAGAATTCATCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCACGGATGCCTTGTGTACGAATACATGGAAAATGGAAACTTGGAGGATAGACTACTCCAGAAAAACAGTAATGACCCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCCTCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCGCAACCTATCATCCATCGGGACTTGAAACCGGCAAACATCTTGCTTGGCCATAACCTTGTCAGCAAGATTGGTGATGTCGGTCTTTCCACAATTCTAAATTCAGATGATTTATCTGCCATGTATAAGGACACGGCGCCTGTTGGAACACTCAGCTATATTGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACAAAATCTGATGTTTATGCTTTTGGATTAGTGATCTTACAGTTGTTGACAGCAAAACCAGCCGTAGCACTTACTCATGCAGTTGAAACAGCTATTGATGATGGTAACTTAGCAGATATATTGGATCCAAAAGCAGGACCATGGCCACTACAAGAGACACTAGACATAGCTCGGTTAGCATTGAGCTGTGCAGAGATGCGGCGTAAGGATCGACCAGATTTGAAAGATCATGTGCTACCCATGCTTGAGATGTTGAAAGATGTTGCCGATGAGGCTCAAGCTCAACATTCTGCTTCATTAGTTACTATAAAATCCAAACCTCCCAACCATTTTATATGCCCTATACTTCAGGATGTGATGGATGACCCTTGTGTTGCCGCAGATGGATATACATACGATCGCAGTGCAATTGAAAAGTGGCTTCAAAAGAATGACAAATCACCAATGACAAATATGGTTTTACCTCATAAGCATCTAATTCCTAATTATACACTTCTATCTGCAATTCTGGAGTGGAAGACCTGA 2397 0.4047 MDRIQEADENNKNSVVALAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVINGVPTPMGDVLPISQVRNDVANAFRREVEWRTNQMLLPFKSLCEQRKVHVDVAVIESDDVATAVAEEVSKNVITKLVLGASSSGIFKSKHKGMSAKISVCAPRFCTVYAVSKGKLSIRQSDMQTDGNIVDDTTSETSFSSSSSSNYTSTSHSQTDFGSVASSAALHSYPLATRRHKALSSTDQTLLSTSPNLSETTHFRGQSLDLGRKIADKNSDIDHALSQASSGGSISDTESSIYGQNYAKYVPQGTKLPTPNRQENYNLELEKLRIELRHAQGMHAVAQTENIDASQKLNELTKRRSEESMKMKEIVANEEMAEELANQEREKYEAAAREAEYLKQRAAREAAERKEAELKAIYAAKEKEKLEGALSGSTPQYRIFTWDEIVSATSSFSEDLKIGMGAYGVVYKCTLHYTTVAVKVLHSNGNCQSKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNDPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGHNLVSKIGDVGLSTILNSDDLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAVALTHAVETAIDDGNLADILDPKAGPWPLQETLDIARLALSCAEMRRKDRPDLKDHVLPMLEMLKDVADEAQAQHSASLVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRSAIEKWLQKNDKSPMTNMVLPHKHLIPNYTLLSAILEWKT 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00103 798 CDD STK_N 15 167 - -
Trre5g00103 798 Coils Coil 311 331 - -
Trre5g00103 798 Pfam Protein tyrosine and serine/threonine kinase 450 700 IPR001245 GO:0004672|GO:0006468
Trre5g00103 798 SUPERFAMILY Protein kinase-like (PK-like) 426 702 IPR011009 -
Trre5g00103 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Trre5g00103 798 ProSiteProfiles Protein kinase domain profile. 445 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00103 798 Gene3D Phosphorylase Kinase; domain 1 423 517 - -
Trre5g00103 798 Pfam U-box domain 732 797 IPR003613 GO:0004842|GO:0016567
Trre5g00103 798 Gene3D Transferase(Phosphotransferase) domain 1 518 730 - -
Trre5g00103 798 Gene3D HUPs 6 146 IPR014729 -
Trre5g00103 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 731 798 IPR013083 -
Trre5g00103 798 SMART serkin_6 445 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00103 798 CDD RING-Ubox_WDSUB1-like 732 786 - -
Trre5g00103 798 SUPERFAMILY RING/U-box 729 797 - -
Trre5g00103 798 Coils Coil 359 420 - -
Trre5g00103 798 ProSitePatterns Protein kinases ATP-binding region signature. 451 472 IPR017441 GO:0005524
Trre5g00103 798 ProSiteProfiles U-box domain profile. 730 798 IPR003613 GO:0004842|GO:0016567
Trre5g00103 798 MobiDBLite consensus disorder prediction 179 206 - -
Trre5g00103 798 PANTHER OS02G0152300 PROTEIN 15 794 - -
Trre5g00103 798 SMART Ubox_2 734 796 IPR003613 GO:0004842|GO:0016567
Trre5g00103 798 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00103 Trre-Chr5 558131 562351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00103 15 798 U-box Gene Family AT4G25160 51.995 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre5g00103 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00103 - - gsj:114409387 1159.44