Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00090 ATGGCTCTGAAGTTTATAGCGATTTCGGCGGTTTCTACAGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTATCATTAGATAAACTTAAGTCAGATGGACTAATCGGCTGGAATTCAATTCACCTAGACAATGTCAATCATGACATTGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTACTGACAAATTGCATGATCAATGTATTTGTCCTTCTTAATCTTTGTCTCAAGGCTATGTTTTTCGCAGACTTGTATCCTTCTGAAACTCGTAAATTGATTGAGCGTCTCGTTAATTATGTCATTTACAAGGGGACATTTCTTCCATTGATTGTGCCACCAACACTTTATCAGGCTGGTCTTTGGTCAACTTGGTTGGCCGTGCTCTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGACTGAATGCATCTCCATCTGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTCGATGTTCTCTGGATAAGGCTTTGTCTTTCAATATATAGAACACATGGGTCGTCTATGTTTCTCTTACTATTCTTTGAGCCTTTAAGTATTGCTTTCGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGCTGCTTGACATATGGATTCATCACTCGGCTTGCAGTGGCAGTGATTTCCGAACACCTAAACTGCTTGACACATTAACTGCAGGTTCTTTATTGGAATGGAAGGGAGTTCTTATCCGAAACTTAGGATTTTTCCTGGATATGGCAACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCGTTACTTGGTGCAATGATAAATCGTGTAAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCACTTCATGCAGCTCTTCCCGATGCAACAACCGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGCTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTACACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGTCGCCCAGAAAATGAAACTAGCGCAAGTACAGGGGTAATATCCAGTGATGAGCAACTTGCACGCGAAATAAGTGCAGGATTTGATCGTCAAAACTCAAATAGACATACCATGCCAGCAGGATTGTTTCCAAATCAGACACCCAACAATGCCGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGACTCGGGATGGTTGCATTCTTGGCCAAGTCAGGGTGTTGATGGTGGTGCTGGTCCATCTACTGGTATTAGAACAGTAGGTCTTGGAAGAGTTCAAATGATGATGAGACATCTTGCATCCGTTGGAGAAACCTATGCTCAGACCACCTTTGATGATGCTTCTTGGAACCTTTGGCCTATTAATTCGTCTCAGGCTTCTACAAGTGGTCCAAGTCCGACGACTATTCCTTCCCCTGGTGTAAGATTGCCAGGAGGAAGTGTTGGTTTACATATAAGGACTCCTTCACGATCTGGAAATGATAATGTAGCAAATGTACTTGCTATGGCTGAGACTGTTCGAGAGGTTCTGCCTCATATTCCAGATGACATGATATTCCAGGACTTACAGCGGACAAATTCTGTCACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1773 0.423 MALKFIAISAVSTVLSFVGLQFCTDLSLDKLKSDGLIGWNSIHLDNVNHDIELPLGLYTTIGLLTNCMINVFVLLNLCLKAMFFADLYPSETRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLSIYRTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSGSDFRTPKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAMINRVKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETSASTGVISSDEQLAREISAGFDRQNSNRHTMPAGLFPNQTPNNAEGVPWRGAGLDSGWLHSWPSQGVDGGAGPSTGIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINSSQASTSGPSPTTIPSPGVRLPGGSVGLHIRTPSRSGNDNVANVLAMAETVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00090 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Trre5g00090 590 Pfam Ring finger domain 336 380 IPR001841 -
Trre5g00090 590 FunFam E3 ubiquitin protein ligase RIN2 549 589 - -
Trre5g00090 590 SUPERFAMILY RING/U-box 325 386 - -
Trre5g00090 590 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Trre5g00090 590 Gene3D - 549 589 - -
Trre5g00090 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Trre5g00090 590 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 9 590 - -
Trre5g00090 590 SMART ring_2 338 379 IPR001841 -
Trre5g00090 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
Trre5g00090 590 CDD CUE_RIN3_plant 551 588 IPR035667 -
Trre5g00090 590 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Trre5g00090 590 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00090 Trre-Chr5 497131 502097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00090 57 397 C3H Transcription Factor Family AT3G16090 29.428 4.67e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00090 K10636 - gmx:100820578 1022.31