Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00086 ATGGGTTCGCTCGATGCACCAATCAGCGCGGAAAACGGCACCGTTCCGGCCGCCGGCCACGGTAAATCTCCGTTAACTGATGGAGGCATACGCGCTCCACCGTCAGATTCGGTACCGGAGTATGAAGCATCTAAGCGGAGGAGATCGTCTGTGCTTCCCCTGGAAGTTGGGACGCGCGTGATGTGCCGTTGGAGAGACGGGAAGTATCATCCTGTCAAAGTCATCGAACGTCGTAGAGTTCATGGCTGTGGACCCAACGATTATGAGTATTACGTTCATTATACTGAATTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGACCAGCTCGATCTTGATTCTGTGGAGGCAGTTGTTGATGAGAAAGTGGAGGAGAAGGGGGCATCAGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATCGATGAGACACATGTTGAGGGCCATGAGGAGCTTGATGCTGCTAGTTTGCGAGAACACGAGGAGTTTACTAAAGTGAAAAATATAGCTACTATTGAACTTGGAAGATATGAGATCGAGACATGGTACTTCTCCCCATTCCCATCAGAATACAATGACTGTTTGAAGCTGTTCTTTTGTGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAGCAGCTTCAGAGGCATATGAAAAAATGTGATCTTAAGCATCCCCCTGGCGATGAGATATACAGAAGTGGTACACTGTCAATGTTTGAGGTTGATGGCAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTCCTTGATCACAAGACCCTCTATTATGATGTTGACCTGTTTCTGTTCTATGTTTTGTGTGAATGTGATGAACGAGGATGCCACATGGTCGGATATTTTTCCAAGGAAAAACATTCTGAGGAATCTTACAATCTGGCATGTATCCTCACCCTTCCACCTTATCAAAGGAAAGGTTATGGAAAATTTCTAATTGCTTTCTCATATGAACTTTCAAAGAAGGAAGGAAAAGTTGGCACTCCTGAAAGACCCCTTTCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTTTTAGACATTCTGAAAAAGCATAAGGGAAACATTTCCATCAAGGAGCTGAGTGATATGACTGCAATCAAAGCTGAAGATATATTGACAACTCTTCAGGGCTTAGAACTGATTCAGTACAGGAAAGGGCAGCATGTCATTTGTGCGGATCCAAAAGTTTTGGATCGCCATCTCAAAGCGGCTGGCAGAGGGGGTCTCGATGTTGATGTTAGCAAGTTGATTTGGACACCTTACAAAGAACAAAGTTGA 1323 0.4467 MGSLDAPISAENGTVPAAGHGKSPLTDGGIRAPPSDSVPEYEASKRRRSSVLPLEVGTRVMCRWRDGKYHPVKVIERRRVHGCGPNDYEYYVHYTEFNRRLDEWVKLDQLDLDSVEAVVDEKVEEKGASGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPSEYNDCLKLFFCEFCLNFMKRKEQLQRHMKKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDERGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQGLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00086 440 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 164 435 IPR002717 GO:0004402|GO:0006355|GO:0016573
Trre5g00086 440 Pfam MYST family zinc finger domain 166 220 IPR040706 -
Trre5g00086 440 MobiDBLite consensus disorder prediction 1 49 - -
Trre5g00086 440 Pfam RNA binding activity-knot of a chromodomain 54 112 IPR025995 -
Trre5g00086 440 CDD CBD_MOF_like 57 126 - -
Trre5g00086 440 SMART chromo_7 68 127 IPR000953 -
Trre5g00086 440 FunFam Histone acetyltransferase 44 164 - -
Trre5g00086 440 FunFam Histone acetyltransferase 343 422 - -
Trre5g00086 440 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 165 436 IPR016181 -
Trre5g00086 440 Gene3D - 343 423 IPR036388 -
Trre5g00086 440 FunFam Histone acetyltransferase 223 351 - -
Trre5g00086 440 Gene3D - 223 435 - -
Trre5g00086 440 Gene3D - 165 221 - -
Trre5g00086 440 FunFam Histone acetyltransferase 163 220 - -
Trre5g00086 440 CDD NAT_SF 275 334 - -
Trre5g00086 440 Gene3D - 43 164 - -
Trre5g00086 440 Pfam MOZ/SAS family 225 402 IPR002717 GO:0004402|GO:0006355|GO:0016573
Trre5g00086 440 SUPERFAMILY Chromo domain-like 48 165 IPR016197 -
Trre5g00086 440 PANTHER HISTONE ACETYLTRANSFERASE 60 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00086 Trre-Chr5 469758 474651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00086 4 440 C2H2 Transcription Factor Family AT5G64610 85.126 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00086 K11308 - gmx:100819116 825.854