Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00080 ATGGATGCTTCATACGTAGATTCAAATGGAGAAATTTCTGGTGGGCATAAGAAAAGTCATACTTTGGCAATTGTAATCACTATTCTGTTGGTCATGGTTTTGCTACTCGTGATAATAGTCTTCTATGTTTACAAGAGAAAAAGAAAGCAAAGAGAAACGGAGGATAAATCAGAGATCATTTTAGCCGAAAAGGAAGAGGAAGATGAAGATGGACGAGATTTAGAGCTTCCTTTCTTCAATCTTTCTACAATAATTGATGCCACCAATAACTTCTCAAACGATAATAAGCTAGGAGAAGGTGGTTTCGGGCCGGTATATAAGGGTACACTAGCTACAGAAAGACAAGTGATTGCCGTCAAAAGACTTTCAGGAAGTTCAAGACAAGGAGCAAAAGAATTTAAAAATGAAGTTATATTATGTGCAAAGCTTCAACATCGAAATCTTGTCAAGGTTTTAGGTTGTTGTATTCAAGGAGAAGAGAGAATGCTTATCTATGAATATATGCCCAACAAAAGCTTAGATTCATTTCTTTTTGATTCTGCTCAAAAGAAACTTCTAGATTGGTCCAAGCGCTTTAGTATCATATGCGGAGTTGCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGATTGAGGATCATACATAGAGATCTAAAACCAAGCAATATTTTGTTAGACAGTGATATGAATCCGAAAATATCAGATTTTGGCTTGGCAAAAATTTTTGGAGATGACCAAGTTGAAGGGAATACAAACAAAGTAGTCGGGACACATGGTTATATGGCTCCTGAATATGCCATTGACGGACTATTCTCCATAAAATCAGATGTATTTAGTTTTGGAATACTATTGCTAGAGATTGTGAGTGGAAGGAAAAATAAAGGACTTAGCTATCCAAAAAACAATGACAATCTTGTTGGACATGCTTGGGGATTGTGGAAAGAAGGTAGCTCAAAAGAATTAGTCGATGATTGTTTTGGGGACTTGTATATTCTATCTGAAGCTTTACGTTGCATACAAGTTGGTCTTTTATGTCTACAACAACATGCAATTGATAGACCTAATATGGTATCAGTGCTTGCAATGTTGACAAATGAAACTGTTTTAGCTCAACCAAAGGAACCTGGTTTCATAATAAAAAAGGTCTTTGTTGAAGGAGAATCTACATCAAAAAATGTAATGTCTTCCTCAATCAATGAAGTCACTATTTCGTTATTGGATGCTAGATGA 1230 0.3569 MDASYVDSNGEISGGHKKSHTLAIVITILLVMVLLLVIIVFYVYKRKRKQRETEDKSEIILAEKEEEDEDGRDLELPFFNLSTIIDATNNFSNDNKLGEGGFGPVYKGTLATERQVIAVKRLSGSSRQGAKEFKNEVILCAKLQHRNLVKVLGCCIQGEERMLIYEYMPNKSLDSFLFDSAQKKLLDWSKRFSIICGVARGLLYLHQDSRLRIIHRDLKPSNILLDSDMNPKISDFGLAKIFGDDQVEGNTNKVVGTHGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSGRKNKGLSYPKNNDNLVGHAWGLWKEGSSKELVDDCFGDLYILSEALRCIQVGLLCLQQHAIDRPNMVSVLAMLTNETVLAQPKEPGFIIKKVFVEGESTSKNVMSSSINEVTISLLDAR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00080 409 Gene3D Phosphorylase Kinase; domain 1 47 167 - -
Trre5g00080 409 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 408 - -
Trre5g00080 409 Pfam Protein tyrosine and serine/threonine kinase 94 293 IPR001245 GO:0004672|GO:0006468
Trre5g00080 409 Gene3D Transferase(Phosphotransferase) domain 1 168 374 - -
Trre5g00080 409 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00080 409 SUPERFAMILY Protein kinase-like (PK-like) 74 375 IPR011009 -
Trre5g00080 409 CDD STKc_IRAK 97 365 - -
Trre5g00080 409 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 168 371 - -
Trre5g00080 409 SMART serkin_6 91 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00080 409 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 54 167 - -
Trre5g00080 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Trre5g00080 409 Pfam Domain of unknown function (DUF3403) 364 409 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00080 Trre-Chr5 436574 438754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00080 79 409 Receptor kinase-like Gene Family AT4G11530 54.572 7.54e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00080 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00080 - - tpra:123915417 667.922