Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00079 ATGGAATTTCCAAACAAAAATACAATACTAGAAACCGCTGATGAGAATTTGAACTCAATCAGTGTTCTTACTCAACAACCCTCATTATTACTCAACCGTACCAGTCATGCCCGTTTTCGTTGCGCTCCGGTGATTTCATTACCTCAACCACCACAAACTCTCTTTCCCTCCACCACTACGCCACCGCTACCACTTCATATTCAACCTCAACGCCAATGTCCAACTCCCGATTTAACTAAGCCTAGTATATTAAGATCTAACCCTAAATTATTATCATTAGATCTTGAATTCCCCAAAGAAACGTATAACATTTCATCTAACTCATCTTTCGTGTCATCCGCCATTATCGGTGACGGCAACGTTTTCAATATCGGACAAGGTTCATATCTCCTTACACCGATGATCTCCGGTGGTAAACCACATCTTTCATTGTCATCATTGAAGAATAAGTATCACTGCAACTCTGAAAGCGGAAAACGTTCCCATTACACAAACAAAAGGAAAAATAAGATAACGAGAACCATGAGAGTAGAGGCGATAAGTGATAAAATTGCGGATATACCAAAGGATGGGTATTTGTGGAAGAAGTATGGCCAGAAATTGATAAAAGGATCACCGTATCCAAGGGGATATTATAAGTGCACTAGAATGAAAGATTGTCCCGCTAAAAAAATGGTGGAGAGGGCAAAGGATGATCCTAAGATGATGATTGTAACGTACGTGGAAGAACATTGTCATATTTGA 744 0.3965 MEFPNKNTILETADENLNSISVLTQQPSLLLNRTSHARFRCAPVISLPQPPQTLFPSTTTPPLPLHIQPQRQCPTPDLTKPSILRSNPKLLSLDLEFPKETYNISSNSSFVSSAIIGDGNVFNIGQGSYLLTPMISGGKPHLSLSSLKNKYHCNSESGKRSHYTNKRKNKITRTMRVEAISDKIADIPKDGYLWKKYGQKLIKGSPYPRGYYKCTRMKDCPAKKMVERAKDDPKMMIVTYVEEHCHI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00079 247 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00079 247 Gene3D WRKY domain 173 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00079 247 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 115 246 IPR044810 GO:0003700
Trre5g00079 247 Pfam Plant zinc cluster domain 153 186 IPR018872 -
Trre5g00079 247 ProSiteProfiles WRKY domain profile. 183 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00079 247 SUPERFAMILY WRKY DNA-binding domain 186 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00079 247 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00079 Trre-Chr5 433996 435178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00079 30 246 WRKY Transcription Factor Family AT2G24570 46.250 2.40e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g00079 WRKY 7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00079 - - gmx:100170746 203.756