Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00078 ATGGCCAACAATTTTCCTATGAAATTGTTTGTTATTATTCTCAATCTACTATTCTTCTTCTCTCAATTATCCACTGCAATTGATACAATCACCCAAGATCAATCTCTAATTGATGATGGCAACACCACCTTGGTTTCTAATGATGGAACATTTGAGTTAGGCTTCTTTAGACCAGGCAGTTCCACAAATCGATATGTTGGAATATGGTACAAAAACATCCCAAATAGAAGAATAGTTTGGGTTGCAAACCGTGATAATCCAATCAAACACAACAATTCAAACTCAACCATGTTGGTTATAAGCAAAGAGGGAAACCTTGTACTACTTACAAACAATAATCAAACTCTTGTTTGGTCAACAAACATCACAACAAAATCATTGTCTAATAATACAAGTTCTCATGTGGCTCAACTATTAGACAATGGAAACTTTGTAATCAAAGACAACAACAATAGTGATCCACAAAGTAATAATTTCTTATGGCAAGGTTTTGATTTTCCTTGTGATACTTTATTGCCAGAAATGAAACTCGGATGGGACCTAAAAACCGGTCACAATCGTCAATTAACTTCTTGGAAAAATTGGGATGATCCGTCTTCGGGAGATTTGACTTGGGGTATTGTTCTTAGTAGTAATCCAGAAATTGTAATGAAAAAAGGGTCAATTGAAATTCATAGAAGTGGCCCTTGGAATGGAGTTGGATTTAGTGGAGCACCTGTGGAGGTTATTACTTCAACTGTTGTAGTTACAAAATCTATAAACAATTCTGATGAAGTTTATTACACATATAGTCTTGTAAACACGAGTGTGGTTTCGATAACTTATTTGAACCAAACAGTTGATCTTCGTCGACGCATTGCATGGAGTCCAGAGGAGGATACTTGGAAGGTTTATGAGTCCGTTCCAACAGATTATTGTGATGAATATAATCATTGTGGTTCCTATGGAAATTGCGTCCATAACGAATCTCTTAGTACATGTCTATGTTTAAATGGATTTGAGCCTAAATCGTCGCAAAATTGGAACACATTTAATTCGACACAAGGATGTGTGCGCAAAGGTGAAGATACTTGTGGGGTGAATGATAGTTTTCAAAGATTTTATGGATTGAAATTGCCCGAAACAAAACATACTTGGGTTGATGCTAATATGACACTCGATGATTGTAAGAATAAATGCTTGGCGGATTGTTCTTGCACGGCTTATTCAAGCTTGGATGTGGGTGGAGATGGTAGTGGTTGTTGTATTTGGTTTGGTGATCTTATTGATTTAAAACAGATCTCATCATTCCAACAATATCTATATATTCGAACGGACGATTCTACCGTAGATTCAGGTGGGCATAACAAAAAGAAGACTTTGACAATTGCAATTACTATTCCATTGGTCATTGTTTTACTACTCATGATCATAGTCTTCTACGTTTACCAAAAGAGAAAGCAAAGAGAGGAATATGAGGACCAACAAGATTTTGACCTTCCTTTCTTCAGTTTTTCTACAATGATTAGTGCCACAAATGACTTCTCAAACTATAACAAACTAGGAGAAGGTGGGTTTGGACCAGTATATAAGGGTACATTAGATGGGCAAGAGATTGCCATCAAAAGGCTTTCAGGAAGTTCGAGACAAGGATTAAAAGAATTTAAAAACGAAGTTATATTATGTGCAAAACTTCAACACCGAAATCTAGTTAAGGTTCTTGGTTGTTGCATTCAAGGTGAAGAGAGAATGCTTGTCTATGAATATATGCCCAACAAAAGCTTAGATTCATTTCTTTTTGATCCAGCCCAAAAGAAACTTTTAGATTGGAGCACGCGCTTCAACATCATATGTGGAGTTGCTCGTGGACTTATTTATCTTCATCAAGATTCTAGATTGAGAATCATACATAGAGATCTAAAACCAAGTAATATTTTATTAGACAATTATATGAATCCAAAGATATCGGATTTTGGCTTGGCAAAAATTTGCGGAGATGATCAAGTTGAAGGAAAAACAAAAAGAGTAGTTGGAACACATGGTTATATGGCTCCAGAATATGCCATTGACGGTCTATTCTCCACAAAATCTGATGTATTTAGCTTTGGCATATTATTGTTAGAGATTGTGAGTGGAAAGAAAAATAAAGGACTTACATTTTCAAGCAACAACCATAATCTTGTTGGGCATGCTTGGAGTTTGTGGAAAGAAGGGAATTCAAAAGAACTTATTGATGTATCTTTTGGGGACTCGTATATTGTATCCGAAGCTTTACGATGCATACAAGTTGGTCTTTTATGTTTACAACGCCATCCTGATGATAGACCAAATATGACATATGTGCTTGCGATGTTGACCAACGATACTATTTTAGCTCAACCGAATGAACCCGGTTTCATATTAAAAAGGGTCTCAACTGATGAAGAATCTACAACAAAGTCTTCTATCTCAATTAATGATGTCACTATTACATTATTAGATGTTAGATGA 2469 0.3572 MANNFPMKLFVIILNLLFFFSQLSTAIDTITQDQSLIDDGNTTLVSNDGTFELGFFRPGSSTNRYVGIWYKNIPNRRIVWVANRDNPIKHNNSNSTMLVISKEGNLVLLTNNNQTLVWSTNITTKSLSNNTSSHVAQLLDNGNFVIKDNNNSDPQSNNFLWQGFDFPCDTLLPEMKLGWDLKTGHNRQLTSWKNWDDPSSGDLTWGIVLSSNPEIVMKKGSIEIHRSGPWNGVGFSGAPVEVITSTVVVTKSINNSDEVYYTYSLVNTSVVSITYLNQTVDLRRRIAWSPEEDTWKVYESVPTDYCDEYNHCGSYGNCVHNESLSTCLCLNGFEPKSSQNWNTFNSTQGCVRKGEDTCGVNDSFQRFYGLKLPETKHTWVDANMTLDDCKNKCLADCSCTAYSSLDVGGDGSGCCIWFGDLIDLKQISSFQQYLYIRTDDSTVDSGGHNKKKTLTIAITIPLVIVLLLMIIVFYVYQKRKQREEYEDQQDFDLPFFSFSTMISATNDFSNYNKLGEGGFGPVYKGTLDGQEIAIKRLSGSSRQGLKEFKNEVILCAKLQHRNLVKVLGCCIQGEERMLVYEYMPNKSLDSFLFDPAQKKLLDWSTRFNIICGVARGLIYLHQDSRLRIIHRDLKPSNILLDNYMNPKISDFGLAKICGDDQVEGKTKRVVGTHGYMAPEYAIDGLFSTKSDVFSFGILLLEIVSGKKNKGLTFSSNNHNLVGHAWSLWKEGNSKELIDVSFGDSYIVSEALRCIQVGLLCLQRHPDDRPNMTYVLAMLTNDTILAQPNEPGFILKRVSTDEESTTKSSISINDVTITLLDVR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00078 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 474 582 - -
Trre5g00078 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 198 IPR036426 -
Trre5g00078 822 Gene3D Transferase(Phosphotransferase) domain 1 583 788 - -
Trre5g00078 822 Pfam Domain of unknown function (DUF3403) 779 822 IPR021820 GO:0004674
Trre5g00078 822 Gene3D Phosphorylase Kinase; domain 1 472 582 - -
Trre5g00078 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 164 - -
Trre5g00078 822 CDD STKc_IRAK 514 780 - -
Trre5g00078 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 768 - -
Trre5g00078 822 Gene3D Hepatocyte Growth Factor 357 436 - -
Trre5g00078 822 ProSiteProfiles PAN/Apple domain profile. 358 440 IPR003609 -
Trre5g00078 822 Pfam Protein tyrosine and serine/threonine kinase 511 708 IPR001245 GO:0004672|GO:0006468
Trre5g00078 822 Pfam S-locus glycoprotein domain 226 337 IPR000858 GO:0048544
Trre5g00078 822 Pfam PAN-like domain 358 424 IPR003609 -
Trre5g00078 822 CDD B_lectin 35 167 IPR001480 -
Trre5g00078 822 ProSiteProfiles Protein kinase domain profile. 508 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00078 822 SMART ntp_6 359 438 IPR003609 -
Trre5g00078 822 ProSiteProfiles Bulb-type lectin domain profile. 27 159 IPR001480 -
Trre5g00078 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Trre5g00078 822 CDD PAN_AP_plant 357 438 - -
Trre5g00078 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Trre5g00078 822 SMART serkin_6 508 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00078 822 SUPERFAMILY Protein kinase-like (PK-like) 489 778 IPR011009 -
Trre5g00078 822 ProSiteProfiles EGF-like domain profile. 302 339 IPR000742 -
Trre5g00078 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Trre5g00078 822 Gene3D - 21 163 IPR036426 -
Trre5g00078 822 SMART blect_4 35 167 IPR001480 -
Trre5g00078 822 Pfam D-mannose binding lectin 78 193 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00078 Trre-Chr5 427960 431428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00078 454 803 Receptor kinase-like Gene Family AT4G23190 52.186 1.29e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00078 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00078 - - tpra:123915417 1318.52