Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00071 ATGGAATCTAATAGGCCACTTTTGTTACAATCACCAAGAACACCAAATGATCAAGAGTTTCCAACAATTCCAGTTTTTCCTGAGCTACCAAAATCAAAGTCAAGTTCAAGCAATACAGTAACATTTTCTGGTATAGAATATGGTCAACAAGTTGATAACAAAACCTCTTCAAACTCATCAACATCATCAACTAAAAGTGCCATGTCAATTCATTCAATGAGTTCTAGCAAGAGGAACAATAGTTTAAACCATTCAGGATCAAAAAAGCCTGTACCTATAAGGTATGGTTCAAAAGGTGGTGGTGATTCTGATGGATTAACCATGTCACAAAGGGAACTTAGAGATGAAGATGCAAGATTGGTTTATATCAATGATCCTGACAAAACCAATGAAAGTTTCGAATTTTTCGGAAATTCAATAAAAACTGCTAAATACTCAATCCTTACTTTCATTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATGTATATTTTCTCATCATTGCTATTCTCAATCAGCTTCCTCAACTTGCAGTATTTGGAAGATATGTTTCGATTCTACCGTTAGCTTTCGTTCTGTTTGTTACCGGTGTGAAAGATGCTTTTGAGGATTGGAGGAGACACAATTCAGATAAAGTTGAGAATAACAGGTTAGCATCAGTTTTGATTAGTGATGGTAGTTTCATGGAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGATATTGTTTTGTTGTCAACTAGTGATCCAACTGGTGTTGCATATGTTCAAACTATTAATCTTGATGGTGAGTCTAATTTGAAGACTCGGTATGCGAAACAAGAGACAGGTTCAAAGGTTCAACCGAGGTATACTGGTTTGATTAAGTGCGAGAAACCGAATAGGAATATTTATGGATTTATGGCGAATATGGAAATTGATGGTAAGAAGTTGTCACTTGGCTCAACCAATATTGTGCTTAGAGGATGTGAGCTCAAGAATACAAGTTGGGCGCTTGGTGTCGCGGTTTATTGTGGCCGCGATACCAAAGCTATGCTCAATAGTTCAGGAGCTCCATCGAAGAGAAGTAGGCTCGAGACTCGGATGAATTACGAAATCATTATGTTGTCCTCCTTTCTTGTTGCATTGTGTACGATCACATCGGTTTGTGCTGCGGTTTGGTTGAAGCGCCATAAGGACGAGCTGAATTTGTTGCCTTATTATAGGAAACTTGATTTTTCGAAACCGGAAGTTGAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTATCAAGTCATGATTCCTATTGCTTTGTACATTTCTATGGAGCTTGTTCGTGTCGGCCAGGCCTATTTCATGATCGAAGACCATCGGTTGTATGATGAGGCTACTGATTCAAAATTTCAGTGCAGGGCTTTGAATATTAATGAAGATTTGGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAGAATAAGATGGAGTTTCAATGTGCTAGCATTTGGGGAGTTGATTATAGTTCCACAAAAGCCAGCATGGATGGTGAGCTAGGTGAATACTCAGTGCAAGTTGATGGAAAGGTGTTGAAGCCAAAGATGAAAGTGAAAGTTAATCCAGAGCTTTTGAAATTGGCAAGAAGTGGACATGGAAATGAGGAAGGAAAAAGGATCTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTCTTGTTGTTGACACACCTGAACCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCACCAGATGAACAGGCATTGGCGTATGCAGCCGCAGCCTATGGTTTTATGCTTATCGAACGAACCTCTGGCCACATTGTCATCGATATTCACGGCAAAAGACTAAAGTTCAATGTCTTGGGTTTACATGAATTTGACAGTGATAGAAAAAGGATGTCGGTTATATTAGGCTACCCCGACAACTCGGTAAAACTCTTTGTCAAAGGAGCAGACACAACCATGTTTAATGTAATAGACAAATCATACAACATGGACTTAATAAAATCCACAGAAACTCATCTTCATGCATATTCATCCCTTGGTTTAAGAACACTTGTTATCGGAATGAAAGAACTCAACACTTCAGAGTTTGAGCAATGGCATGCAGCTTACGAAGCAGCAAGCACTGCGGTATTCGGTAGGGCTGCAATGCTCAAAAAAATTTCAAACAATGTTGAAAACAATGTTTGCATTTTAGGAGCTTCTGCTATTGAAGATAAACTTCAACAAGGCGTGCCAGAAGCTATTGAGTCTCTAAGAGCAGCAGGGATTAAAGTTTGGGTTTTGACTGGTGACAAGCAAGAAACTGCTATATCTATCGGATTCTCGTCAAAACTTTTAACAAGAAACATGACTCAAGTTATTATTAATAGTAATAATAGAGCTTCATGTAGAAAAAATCTCAAAGATGCTCTTGAAAGGTCCAGAAAACTTATGTCTACATTTGGTGTTGGCAACAATGATGGAGCAGTTGCAAATCAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATTCTTGATAGTGAACATGAAGAAGAGCTATTTCAACTTGCAAGTTTGTGTTCCGTTGTTCTTTGTTGTCGAGTTGCTCCACTGCAAAAGGCTGGTATTGTTTCCCTTGTGAAGAATAGGACATCTGACATGACACTAGCCATTGGAGATGGTGCTAATGATGTGTCAATGATTCAAATGGCTGATGTTGGAGTTGGTATCAGTGGACAAGAGGGTAGACAAGCTGTAATGTCATCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCACTGGAATTACCAAAGACTTGGTTACATGATACTATACAATTTCTACAGAAATGCTCTCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTACACTGCCTTCACTTTAACAACTGCTATAAATGAATGGAGTTCCACATTATATTCAATAATCTACAGTGCACTACCAACTATTATTGTTGGAATTCTTGACAAAGATCTTGGTAGAAGCACTCTCCTAAAGTTTCCTCAACTTTATAGTGCTGGCCAAAGAGATGAAGCCTACAACAAAAAACTGTTTCTGCTAACAATGGCTGATACTTTGTGGCAAAGCATGGTTATCTTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATGTAGCAAGTATAGGAGATCTTTGGACTCTTGCGACGGTTATTTTGGTCAATTTACACTTGGCTTTGGATGTTGTTAGATGGTATTGGGTTACTCATGCTGTCATTTGGGGATCTATTGTTGCAACTTTCATTTCTGTCATGATCATTGATGCTATACCTCAACTTCCTGGTTACTGGGCTTTCTTTCATGTTTCAAGCACTGGATTATTTTGGGCATTGTTGCTAGGAATTGTGATAGCAGCGTTACTTCCACGTTTGGTTGTAAAATTTATTTATCAATATTATTTTCCTAGTGATATTCAAATATCTAGAGAAGCTGAAAAGGTGAGACAATATCAAAGAGTTGCTGAAAATGGACAAATAGAAATGCTTCCTATCTCAGATCATCAACAACATAGATAA 3669 0.3788 MESNRPLLLQSPRTPNDQEFPTIPVFPELPKSKSSSSNTVTFSGIEYGQQVDNKTSSNSSTSSTKSAMSIHSMSSSKRNNSLNHSGSKKPVPIRYGSKGGGDSDGLTMSQRELRDEDARLVYINDPDKTNESFEFFGNSIKTAKYSILTFIPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLASVLISDGSFMEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRDTKAMLNSSGAPSKRSRLETRMNYEIIMLSSFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSKPEVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDHRLYDEATDSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSTKASMDGELGEYSVQVDGKVLKPKMKVKVNPELLKLARSGHGNEEGKRIYDFFLALATCNTIVPLVVDTPEPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGKRLKFNVLGLHEFDSDRKRMSVILGYPDNSVKLFVKGADTTMFNVIDKSYNMDLIKSTETHLHAYSSLGLRTLVIGMKELNTSEFEQWHAAYEAASTAVFGRAAMLKKISNNVENNVCILGASAIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGFSSKLLTRNMTQVIINSNNRASCRKNLKDALERSRKLMSTFGVGNNDGAVANQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNALLVLVLFWYVLYTAFTLTTAINEWSSTLYSIIYSALPTIIVGILDKDLGRSTLLKFPQLYSAGQRDEAYNKKLFLLTMADTLWQSMVIFWPPLFAYWKSTIDVASIGDLWTLATVILVNLHLALDVVRWYWVTHAVIWGSIVATFISVMIIDAIPQLPGYWAFFHVSSTGLFWALLLGIVIAALLPRLVVKFIYQYYFPSDIQISREAEKVRQYQRVAENGQIEMLPISDHQQHR 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00071 1222 Gene3D - 200 361 - -
Trre5g00071 1222 FunFam Phospholipid-transporting ATPase 608 741 - -
Trre5g00071 1222 Pfam Cation transport ATPase (P-type) 612 687 - -
Trre5g00071 1222 SFLD p-type atpase 487 970 IPR044492 -
Trre5g00071 1222 FunFam Phospholipid-transporting ATPase 760 959 - -
Trre5g00071 1222 Pfam E1-E2 ATPase 222 462 - -
Trre5g00071 1222 SUPERFAMILY Calcium ATPase, transduction domain A 223 358 IPR008250 -
Trre5g00071 1222 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 87 1199 - -
Trre5g00071 1222 MobiDBLite consensus disorder prediction 1 108 - -
Trre5g00071 1222 NCBIfam phospholipid-translocating P-type ATPase 135 1194 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre5g00071 1222 SFLD C1.7: P-type atpase like 487 970 - -
Trre5g00071 1222 CDD P-type_ATPase_APLT_Dnf-like 137 1077 - -
Trre5g00071 1222 MobiDBLite consensus disorder prediction 1 18 - -
Trre5g00071 1222 Gene3D - 760 959 IPR023214 -
Trre5g00071 1222 FunFam Phospholipid-transporting ATPase 193 361 - -
Trre5g00071 1222 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 776 IPR023299 GO:0000166
Trre5g00071 1222 NCBIfam HAD-IC family P-type ATPase 889 1005 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre5g00071 1222 Pfam Phospholipid-translocating ATPase N-terminal 121 188 IPR032631 -
Trre5g00071 1222 MobiDBLite consensus disorder prediction 29 87 - -
Trre5g00071 1222 SUPERFAMILY Calcium ATPase, transmembrane domain M 137 1186 IPR023298 -
Trre5g00071 1222 Gene3D - 610 740 IPR023299 GO:0000166
Trre5g00071 1222 PRINTS P-type cation-transporting ATPase superfamily signature 919 938 - -
Trre5g00071 1222 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Trre5g00071 1222 SUPERFAMILY HAD-like 491 960 IPR036412 -
Trre5g00071 1222 ProSitePatterns E1-E2 ATPases phosphorylation site. 506 512 IPR018303 -
Trre5g00071 1222 PRINTS Sodium/potassium-transporting ATPase signature 996 1016 - -
Trre5g00071 1222 PRINTS Sodium/potassium-transporting ATPase signature 497 518 - -
Trre5g00071 1222 Pfam Phospholipid-translocating P-type ATPase C-terminal 947 1187 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00071 Trre-Chr5 380324 385175 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00071 75 1217 Primary Pumps ATPases AT5G04930 68.902 0.0 1666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00071 K14802 - gmx:100813982 1902.49