Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00065 ATGGCCGAGGTAATTAACTTACCTCCTGAATCTCACGATCGATCTCCCACCACTGCTGCTCCCCATCCTCCTCCTCCCGCCGACGATGATCTCCCACCTCCACCTAACCCTCGTCGGAGAGATTTCGACCGCCGTGATGACAGGGATTTCGACCGCCGTCCTCACCGTGGTGGCAGAGGTGGCCGAGGTGGTTACTACAACCGTGACCGAGACTTCAAGCGCCGTCGTAGTCCTAGCCCTAATTACCGTGACCGTCGCTATTCTCCTCCTCCTCCTCCACAGTCTAGGAGGTCACCTCCGCCTTATAAGAGATCCAGAAGGGGTAGCCCTCATGGACCCAATGACAGATTTGGCTATGATCACTTTGGTGGATATGAACGCGGAGTGGGTGGAAGGGGTGGTTATGCAGATGATCGATCTGGTGGCAGGTTTCCACATCGATCTGCAGGCGGATATCAAAATGGAATTTCTGATCTGGATGCCAATCGCGGTTATGCAGATTTGCCAAGTGGAGGTGCTCGAAGAGAGGGGTTGATGTCCTATAAGCAATTCATTCAGGAGCTTGAAGATGACATACTGCCATCTGAAGCTGAGCGTAGATACCAAGAGTACAAATCAGAGTATGTTACTACCCAAAAGCGTGCTTATTTCAATGCTCACAAAGATGAGGCGTGGTTGAAAGATAAATATCATCCAACAAATTTACTGTCTGTGATTGGAAGGAGGAATGATAATGCTCGACGTCTGGCAAAGGATTTTTTGCTTGATTTGCAAAGCGGAACACTAGACATAAATCCAAGTTTAAGCTCGGCATCCGCTAGATCAGAGCAAGCCAGCGAGCCAAATTCAGAGGAGGAAACAGATGCTGGTGATAAACGAAGAAGACATGGTAGGGGATCTAATAAGGATAATGACTTCTCTGCTGCTCCAAAGGCTCACCCTGTCAGTTGTGAACCTAAAAGGATACAGGCAGATATTCAACAGGTTCAGGCTGTTGTTCGTAAGCTTGACAAGGAAAAAGGGATTGAAGATAATATTTTAAGCACCAGTGATCATAGTAAAAATGGTGATAAGTCTCACAGTGGATCTGTGGGGCCCGTAATTATAATTCGTGGCCTAACATCTATTAAAGGCTTAGAGGGTGTTGAGCTACTGGACACACTTATAACATATCTTTGGCGGATTCATGGTGTAGATTATTATGGAATGCTTGAGGTTAACGATGCCAAGGGTTTTAGGCATGTAAGACCAGAAGGATCAAGGCATGAAGAAACAGGTAAATCAGGGTCAGAATGGGAGAAGAAACTTGATTCATTTTGGCAGAGAAGGTTGGACGGCCAGGATCCCTTGGAAGTAAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGACATGTTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGATGGAAGTATGGCTGTGGAGCCAAGAGTTGCACAAAGCTTTTTCATGCGGTTGAGTTTGTTTACAAACATCTCAAGCTAAAACACCCAGAGCTTGTGTTGGAACTAACATCAAAATTGCGTGAAGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAAACTCAGAAGGACAAGCCTTTAAAGCGAAGATTACTGGATGGCCGATTGAAAGATGACCGTGGGAATCGGCGAGACCAGGATAGGAGTGACAGAACAAATGGAGATAGGCCTGACAATTCTCCATCCCGTGAAAGGCAGTTGGGAAACCGTGATGACACAATGTTTGATGCATATGGAGGGTCTGCTGTACCAACATTCAATGCGGATATGCCCCCTCCTCCATCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCGTTTGTTCCTGCTCCACCAGAAGTTGCGATGCAGATGTTTAGGGACCAAGGACCTTCATTTGATCCATCAGGAATGACGATACGTTCTGGTCCTCACATAGGTGGACAAGCCTCTATGATTGCTGTTCCTTCGGCCTTTAGACCTGATCCTCGACGGATGCGTAGTTATCAAGATTTGGATGCTCCTGAAGAAGAAGTTACTGTCATTGACTATCGGAGCTTGTAA 2118 0.4655 MAEVINLPPESHDRSPTTAAPHPPPPADDDLPPPPNPRRRDFDRRDDRDFDRRPHRGGRGGRGGYYNRDRDFKRRRSPSPNYRDRRYSPPPPPQSRRSPPPYKRSRRGSPHGPNDRFGYDHFGGYERGVGGRGGYADDRSGGRFPHRSAGGYQNGISDLDANRGYADLPSGGARREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYVTTQKRAYFNAHKDEAWLKDKYHPTNLLSVIGRRNDNARRLAKDFLLDLQSGTLDINPSLSSASARSEQASEPNSEEETDAGDKRRRHGRGSNKDNDFSAAPKAHPVSCEPKRIQADIQQVQAVVRKLDKEKGIEDNILSTSDHSKNGDKSHSGSVGPVIIIRGLTSIKGLEGVELLDTLITYLWRIHGVDYYGMLEVNDAKGFRHVRPEGSRHEETGKSGSEWEKKLDSFWQRRLDGQDPLEVRTAKEKIDAAAADMLDPYVRKIRDEKYGWKYGCGAKSCTKLFHAVEFVYKHLKLKHPELVLELTSKLREDLYFQNYMNDPDAPGGTPVMQQTQKDKPLKRRLLDGRLKDDRGNRRDQDRSDRTNGDRPDNSPSRERQLGNRDDTMFDAYGGSAVPTFNADMPPPPSVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSFDPSGMTIRSGPHIGGQASMIAVPSAFRPDPRRMRSYQDLDAPEEEVTVIDYRSL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00065 705 ProSitePatterns Zinc finger C2H2 type domain signature. 485 508 IPR013087 -
Trre5g00065 705 MobiDBLite consensus disorder prediction 84 99 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 18 32 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 264 319 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 344 358 - -
Trre5g00065 705 Pfam Arsenite-resistance protein 2 424 605 IPR007042 -
Trre5g00065 705 MobiDBLite consensus disorder prediction 530 598 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 279 302 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 546 594 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 264 278 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 344 364 - -
Trre5g00065 705 MobiDBLite consensus disorder prediction 1 146 - -
Trre5g00065 705 PANTHER ARSENITE-RESISTANCE PROTEIN 2 38 703 IPR039727 GO:0006397
Trre5g00065 705 MobiDBLite consensus disorder prediction 33 82 - -
Trre5g00065 705 Pfam SERRATE/Ars2, N-terminal domain 182 263 IPR021933 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00065 Trre-Chr5 346628 354104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00065 82 705 C2H2 Transcription Factor Family AT2G27100 61.538 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00065 K27103 - gmx:100811300 990.719