Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00061 ATGGAATCGTCATTGATCAATAAGCCAATGAGAAAGACACTGAGTTCGAACTTATTGCCGATGGCTAGGAGGGATCTTGGATCCAAGGGAGGCAAGATAAATCTCTTAGCTAACCATTTTAGAGTTGGTCTAAACATTAATGATAGCTACTTTTATCACTATAATCCTTGCACTCTAGTCGACTTCCTTCTCGAGAACCAGAATGTTCAACAACCAAACTTAATAGATTGGTCCAAGGAAAAAAGAATGCTGAAAAATCTTAGAATTAAGGCTAACAATAGAGAGTTCAAAATCACTGGACTGAGTGAGAATCCCTGCAGAACACAAAAATTTTTATTGAAACGTGGAAATGATGTTAATGGTGAAGCGCGATCAAATGAAATCACAATTTATGAATACTTCAAACATCACAAAAAAATTGAACTGAGTTATTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAGAGTCCAACTTATTTTCCTGTAGAGCTATGCACGTTGGTCTCGTTGCAACGATACACTAAGGCACTGTCCAATAAGCAAAGAGCTCAATTGGTGTTGGAGTCAAGAACAAATCCACATGAAAGGAAAGAAGCTTTGCAACATTCATTAAGAAACAATATATATGGTGATGAGCCTATGCTTTGTTCTTCTGGGATTACTATTGAACCTTTCTTTACTCAAGTTGAAGGTCGTGTGCTGCAAGCTCCAACCCTTGTAGTTGGAAGAGGGAATAACTTTTGTCCTCAGAATGGGAGATGGAATTTCAACGATAAGAAACTAGTTGAACCGGTGAAAATTGAACGTTGGGCAATAGTAAACTTCTCATCTCGGTGCAATACAAATCATTTGTTGAATCTCATTAAAAAGAATTCTGAATTGAAAGGGATGGACTTAAATCCTCCGTTTGACATATTTGAAGAGGATGGTCGCCACAGAAGTGGGTCGGCATCTTTCAGGGTTGACAAAATGTTCGATATCTTAAAGGCCAAGCTGCCTGGACCCCCTTCACACCCTAGAGCTCAACTTCTGTTATGTATTCTTCCATTTGGCAAGAATTGTGAGATTTATGGTCCTTGGAAAAAGAGATGTCTTGTTGAAGAAGGAATTCCTACTCAATGTATTGCTCCTCCAACAAAAATTAATGATCAATATATTACTAATGTTCTCTTGAAAATTAATGCCAAGCTTGGGGGGATGAATTCCTTTTTGTTAACTGAATCTCAGCATTCTATACCATTGGTTTCTAACGTACCTACATTGATTATCGGAATGGATGTTTCACACGGATCTCCAGGTCAATCAGATGTACCATCTATTGCTGCGGTAGTGAGCTCGAGATATTGGCCTCGAATTTCCCGTTATAGAGCTGCTGTCCGTACTCAGTCATCAAAAGTAGAGATGATTACATCTCTATTCAAGGATGATGGTATCATCAGTGAATTGCTTAACGATTTCCATGCAACTTCTAGAACGAAGCCTCAACAAATCATAATATTCAGGGATGGAGTGAGCGAATCACAGTTTAACCAGGTCCTCAACATTGAATTGGATGAAATCATAAAGGCATGCAAACGTTTTGATGAAAGTTGGTCTCCAAAGTTTACTTTGATCGTTGCTCAGAAGAATCACCATACTAGATTCTTTAAACCCAATGCTCCTCAAGAAAATGTTTCGCCTGGAACTGTAATTGATAACAGTATATGTCATCCTAAAAACAACGACTTCTACTTGTGTGCTCATGCTGGGAAGATTGGTACAACTCGTCCTACTCATTACCATGTTTTATACGATGAAATTGGGTTTTCGGCGGACAATTTGCAAGAACTAGTTCATTCTCTATGTTATGTGTACCAGAGGAGCACAACTGCTATATCAATAGCTGCTCCAATTTATTATGCTCACCTAGCAGCTGCTCAGATAGCACAGTTTATAAAATTTGATGACACAAAGACTCTTTCCAGCCACAATGAATCCACTTCTGATGTACCTGCATTACCACCTCTTCATGAACTAGTGACCAATACTATGTTCTTTTGTTAA 2049 0.3856 MESSLINKPMRKTLSSNLLPMARRDLGSKGGKINLLANHFRVGLNINDSYFYHYNPCTLVDFLLENQNVQQPNLIDWSKEKRMLKNLRIKANNREFKITGLSENPCRTQKFLLKRGNDVNGEARSNEITIYEYFKHHKKIELSYSADMPCINVGKPKSPTYFPVELCTLVSLQRYTKALSNKQRAQLVLESRTNPHERKEALQHSLRNNIYGDEPMLCSSGITIEPFFTQVEGRVLQAPTLVVGRGNNFCPQNGRWNFNDKKLVEPVKIERWAIVNFSSRCNTNHLLNLIKKNSELKGMDLNPPFDIFEEDGRHRSGSASFRVDKMFDILKAKLPGPPSHPRAQLLLCILPFGKNCEIYGPWKKRCLVEEGIPTQCIAPPTKINDQYITNVLLKINAKLGGMNSFLLTESQHSIPLVSNVPTLIIGMDVSHGSPGQSDVPSIAAVVSSRYWPRISRYRAAVRTQSSKVEMITSLFKDDGIISELLNDFHATSRTKPQQIIIFRDGVSESQFNQVLNIELDEIIKACKRFDESWSPKFTLIVAQKNHHTRFFKPNAPQENVSPGTVIDNSICHPKNNDFYLCAHAGKIGTTRPTHYHVLYDEIGFSADNLQELVHSLCYVYQRSTTAISIAAPIYYAHLAAAQIAQFIKFDDTKTLSSHNESTSDVPALPPLHELVTNTMFFC 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00061 682 CDD PAZ_argonaute_like 56 170 - -
Trre5g00061 682 Pfam Piwi domain 346 648 IPR003165 GO:0003676
Trre5g00061 682 Pfam Mid domain of argonaute 251 292 IPR032473 -
Trre5g00061 682 CDD Piwi_ago-like 221 642 IPR045246 -
Trre5g00061 682 SMART Piwi_a_2 345 648 IPR003165 GO:0003676
Trre5g00061 682 ProSiteProfiles Piwi domain profile. 345 648 IPR003165 GO:0003676
Trre5g00061 682 ProSiteProfiles PAZ domain profile. 94 171 IPR003100 GO:0005515
Trre5g00061 682 FunFam Protein argonaute 3 414 682 - -
Trre5g00061 682 Gene3D - 235 407 - -
Trre5g00061 682 SUPERFAMILY PAZ domain 54 208 IPR036085 GO:0005515
Trre5g00061 682 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 650 - -
Trre5g00061 682 Pfam PAZ domain 60 187 IPR003100 GO:0005515
Trre5g00061 682 Gene3D paz domain 51 175 - -
Trre5g00061 682 SUPERFAMILY Ribonuclease H-like 342 646 IPR012337 -
Trre5g00061 682 Gene3D - 413 682 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00061 Trre-Chr5 317635 321875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00061 42 682 Eukaryotic Initiation Factors Gene Family AT5G43810 35.725 3.86e-125 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00061 K11593 - cave:132163279 834.713