Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00060 ATGAGCTTCAAATTCTTCAAAACACAACGTTTTTGTTACGATGTGTCAACTACATTACTTGTAAAGCCTTGCACTCTAGTCGACTTCCTTCTCGAGAACCAGAATGTTCAACAACCAAACTTAATAGATTGGTCCAAGGAAAAAAGAATGCTGAAAAATCTTAGAATTAAGGCTAACAATAGAGAGTTCAAAATCACTGGACTGAGTGAGAATCCCTGCAGAACACAAAAATTTTTATTGAAACGTGGAAATGATGTTAATGGTGAAGCGCGATCAAATGAAATCACAATTTATGAATACTTCAAACATCACAAAAAAATTGAACTGAGTTATTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAGAGTCCAACTTATTTTCCTGTAGAGCTATGCACGTTGGTCTCGTTGCAACGATACACTAAGGCACTGTCCAATAAGCAAAGAGCTCAATTGGTGTTGGAGTCAAGAACAAATCCACATGAAAGGAAAGAAGCTTTGCAACATTCATTAAGAAACAATATATATGGTGATGAGCCTATGCTTTGTTCTTCTGGGATTACTATTGAACCTTTCTTTACTCAAGTTGAAGGTCGTGTGCTGCAAGCTCCAACCCTTGTAGTTGGAAGAGGGAATAACTTTTGTCCTCAGAATGGGAGATGGAATTTCAACGATAAGAAACTAGTTGAACCGGTGAAAATTGAACGTTGGGCAATAGTAAACTTCTCATCTCGGTGCAATACAAATCATTTGTTGAATCTCATTAAAAAGAATTCTGAATTGAAAGGGATGGACTTAAATCCTCCGTTTGACATATTTGAAGAGGATGGTCGCCACAGAAGTGGGTCGGCATCTTTCAGGGTTGACAAAATGTTCGATATCTTAAAGGCCAAGCTGCCTGGACCCCCTTCACACCCTAGAGCTCAACTTCTGTTATGTATTCTTCCATTTGGCAAGAATTGTGAGATTTATGGTCCTTGGAAAAAGAGATGTCTTGTTGAAGAAGGAATTCCTACTCAATGTATTGCTCCTCCAACAAAAATTAATGATCAATATATTACTAATGTTCTCTTGAAAATTAATGCCAAGCTTGGGGGGATGAATTCCTTTTTGTTAACTGAATCTCAGCATTCTATACCATTGGTTTCTAACGTACCTACATTGATTATCGGAATGGATGTTTCACACGGATCTCCAGGTCAATCAGATGTACCATCTATTGCTGCGGTAGTGAGCTCGAGATATTGGCCTCGAATTTCCCGTTATAGAGCTGCTGTCCGTACTCAGTCATCAAAAGTAGAGATGATTACATCTCTATTCAAGGATGATGGTATCATCAGTGAATTGCTTAACGATTTCCATGCAACTTCTAGAACGAAGCCTCAACAAATCATAATATTCAGGGATGGAGTGAGCGAATCACAGTTTAACCAGGTCCTCAACATTGAATTGGATGAAATCATAAAGGCATGCAAACGTTTTGATGAAAGTTGGTCTCCAAAGTTTACTTTGATCGTTGCTCAGAAGAATCACCATACTAGATTCTTTAAACCCAATGCTCCTCAAGAAAATGTTTCGCCTGGAACTGTAATTGATAACAGTATATGTCATCCTAAAAACAACGACTTCTACTTGTGTGCTCATGCTGGGAAGATTGGTACAACTCGTCCTACTCATTACCATGTTTTATACGATGAAATTGGGTTTTCGGCGGACAATTTGCAAGAACTAGTTCATTCTCTATGTTATGTGTACCAGAGGAGCACAACTGCTATATCAATAGCTGCTCCAATTTATTATGCTCACCTAGCAGCTGCTCAGATAGCACAGTTTATAAAATTTGATGACACAAAGACTCTTTCCAGCCACAATGAATCCACTTCTGATGTACCTGCATTACCACCTCTTCATGAACTAGTGACCAATACTATGTTCTTTTGTTAA 1950 0.3841 MSFKFFKTQRFCYDVSTTLLVKPCTLVDFLLENQNVQQPNLIDWSKEKRMLKNLRIKANNREFKITGLSENPCRTQKFLLKRGNDVNGEARSNEITIYEYFKHHKKIELSYSADMPCINVGKPKSPTYFPVELCTLVSLQRYTKALSNKQRAQLVLESRTNPHERKEALQHSLRNNIYGDEPMLCSSGITIEPFFTQVEGRVLQAPTLVVGRGNNFCPQNGRWNFNDKKLVEPVKIERWAIVNFSSRCNTNHLLNLIKKNSELKGMDLNPPFDIFEEDGRHRSGSASFRVDKMFDILKAKLPGPPSHPRAQLLLCILPFGKNCEIYGPWKKRCLVEEGIPTQCIAPPTKINDQYITNVLLKINAKLGGMNSFLLTESQHSIPLVSNVPTLIIGMDVSHGSPGQSDVPSIAAVVSSRYWPRISRYRAAVRTQSSKVEMITSLFKDDGIISELLNDFHATSRTKPQQIIIFRDGVSESQFNQVLNIELDEIIKACKRFDESWSPKFTLIVAQKNHHTRFFKPNAPQENVSPGTVIDNSICHPKNNDFYLCAHAGKIGTTRPTHYHVLYDEIGFSADNLQELVHSLCYVYQRSTTAISIAAPIYYAHLAAAQIAQFIKFDDTKTLSSHNESTSDVPALPPLHELVTNTMFFC 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00060 649 Pfam Piwi domain 313 615 IPR003165 GO:0003676
Trre5g00060 649 Pfam PAZ domain 27 154 IPR003100 GO:0005515
Trre5g00060 649 Gene3D - 380 649 IPR036397 GO:0003676
Trre5g00060 649 FunFam Protein argonaute 7 18 142 - -
Trre5g00060 649 FunFam Protein argonaute 3 381 649 - -
Trre5g00060 649 Pfam Mid domain of argonaute 218 259 IPR032473 -
Trre5g00060 649 CDD Piwi_ago-like 188 609 IPR045246 -
Trre5g00060 649 ProSiteProfiles Piwi domain profile. 312 615 IPR003165 GO:0003676
Trre5g00060 649 ProSiteProfiles PAZ domain profile. 61 138 IPR003100 GO:0005515
Trre5g00060 649 SUPERFAMILY Ribonuclease H-like 309 613 IPR012337 -
Trre5g00060 649 SMART Piwi_a_2 312 615 IPR003165 GO:0003676
Trre5g00060 649 Gene3D paz domain 17 142 - -
Trre5g00060 649 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 617 - -
Trre5g00060 649 CDD PAZ_argonaute_like 23 137 - -
Trre5g00060 649 SUPERFAMILY PAZ domain 18 175 IPR036085 GO:0005515
Trre5g00060 649 Gene3D - 202 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00060 Trre-Chr5 317635 323423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00060 14 649 Eukaryotic Initiation Factors Gene Family AT5G43810 35.725 1.62e-126 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00060 K11593 - cave:132163279 842.032