Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00056 ATGGAATCTCAATTGGTCGATGGAAGTGACCGGACAGAAGTTTCTGTGGATGCTGATTCCGTGGAACCAAATGATGGGTGTAGATTGCAAGAGAATTATTCTGGGAGAGAATTGGGTAGCTCTCATCATGACCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGCATCTGAAGATGCTGCTAAGATATTTTATGATGAATACGCTCGACATGTTGGATTTGTCATGCGTGTGATGTCTTGTCGACGGTCAGAAAGAGATGGTAAGATTCTTGCTCGCAGGCTTGGGTGTAATAAGGAAGGTCATTGTGTCAGCTTACGAGGAAAGCTTGGGTCAGTTCGGAAATCAAGGGCCAGCTCAAGGGAAGGTTGTAAGGCAATGATTCATATCAAGTATGATAAATCTGGAAAATGGGTGATAACAAAGTTTGTGAAAGATCATAATCATCCACTAGTAGTCTCTCCACGTGAAGCACGACAAACAATGGATGAGAAGGATAAGAAAATTCAGGACCTAACAGCAGAACTTCGGATTAAGAAACGGTTGTGTGTAACTTATGAAGAACAGTTAACTTCTTTTATGAAAATTGTCGAAGAGCACAGTGACAAGCTGTCTGCAAGAATTCATCACATACTTGATAATCTTAAAGAATATGAATCCATAGAAGAGCTTTTGCACCAGACGTAG 690 0.4087 MESQLVDGSDRTEVSVDADSVEPNDGCRLQENYSGRELGSSHHDHAIQEPYEGMEFASEDAAKIFYDEYARHVGFVMRVMSCRRSERDGKILARRLGCNKEGHCVSLRGKLGSVRKSRASSREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQDLTAELRIKKRLCVTYEEQLTSFMKIVEEHSDKLSARIHHILDNLKEYESIEELLHQT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00056 229 Pfam FAR1 DNA-binding domain 65 153 IPR004330 -
Trre5g00056 229 Coils Coil 163 190 - -
Trre5g00056 229 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g00056 229 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00056 Trre-Chr5 283473 284747 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g00056 FAR1 4.3e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00056 - - pvu:PHAVU_005G002900g 377.481