Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00048 ATGCCAACTCAATATGAAATCAAACTTCCATCCGATCATGATAATGATGAACAACACGGACGCCGATCAGAGAGAGAAGATGCATTTGCATTTCTCAAGAAAGTAAAAGATGCGTTTCAAGGTAGGGAAAAGTATGACGAGTTTATAGAAATTTTAAAGGATAGCAAGGCTGGAAGAATTGATAGAAGTGTTGTTGTGGAAAGAGTCAAGAAGATGTTTGAAGGGCATACAAATTTAATTTTGGGATTCAACGCCTTCTTGCCAAACACACTTCAAATTCAGCTTCGCAATGGGGGAAAAAGGAAGAAGTTAGCAGAGAACTGTGAAATTCCTTGGGATCTGCTTGATATCATTTCCAGAAAACTAGATATTGACGACTTCTTCGAATTTGCTGAGCTGAAGAGTACTCCTGCTGTAACATCTTTCTCACAGCTAAGGTTGGTTAGTTGTGATGGACAACTTTTAGTGATTCATATTACATTGGAGGAAATATTGAATGTCTACAAGATCGACTTCTCAACCAAGAATTATGTCAAGCTGGAAACTTTGGGTGACATTGCATTATTTTATGCTTCGGGGGAGTACTTCTATGCATTGAGCAACCCGAAAATGTGGGGTTATGAACCAAACTCTTTGCATGTCATCAATCTTTCATGTACAAAATACATAGTGTGTGTTGGGGATGACAACAAGCTGCCAGAATACATTATGCATGATACACATAGAATTCCTCCAAGAGAGAGAGGCTACTTGTTGGACTGGTGTTTCAAACATCTACACTATGAGGTGGATTATTCTCCAAGTTAA 807 0.3854 MPTQYEIKLPSDHDNDEQHGRRSEREDAFAFLKKVKDAFQGREKYDEFIEILKDSKAGRIDRSVVVERVKKMFEGHTNLILGFNAFLPNTLQIQLRNGGKRKKLAENCEIPWDLLDIISRKLDIDDFFEFAELKSTPAVTSFSQLRLVSCDGQLLVIHITLEEILNVYKIDFSTKNYVKLETLGDIALFYASGEYFYALSNPKMWGYEPNSLHVINLSCTKYIVCVGDDNKLPEYIMHDTHRIPPRERGYLLDWCFKHLHYEVDYSPS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00048 268 Pfam Paired amphipathic helix repeat 43 87 IPR003822 GO:0006355
Trre5g00048 268 FunFam Paired amphipathic helix protein Sin3 27 88 - -
Trre5g00048 268 ProSiteProfiles PAH domain profile. 21 90 IPR003822 GO:0006355
Trre5g00048 268 PANTHER SIN3B-RELATED 26 110 IPR039774 GO:0003714
Trre5g00048 268 MobiDBLite consensus disorder prediction 9 24 - -
Trre5g00048 268 Gene3D Paired amphipathic helix 27 88 IPR036600 GO:0006355
Trre5g00048 268 SUPERFAMILY PAH2 domain 21 89 IPR036600 GO:0006355
Trre5g00048 268 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00048 Trre-Chr5 237597 240448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00048 27 118 WRKY Transcription Factor Family AT4G12020 42.391 1.04e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g00048 PAH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00048 - K11644 mtr:120579360 220.705