Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00041 ATGGATTCAAGGAGAATGGAAGAAGAAGAAGAAGAAGCTCCACCATCAAACGATCTGTGTTCAATTTGTCATGGAAACTTCCAGAATCCATGTCAAGCTAACTGTTCTCATTGGTTTTGTGCTAACTGTATTATGCTTGTTTGGAAACACTCTTCCGGCATTCAACCTTGTAAATGTCCACTCTGTCGTCGACCCATTAATCTTTTGGTTCCAACCAACAACAACAACAACGATGATCCTCAAACTATGTCTGAGATTCAAACCTATAACCGTGTTTTTGGTCAACAATCCAATGCTCCTATTACTCAGAGAATTCTTGATCTTCCCTTTCTTCTGAGGAGACTTTTTAGGGATTTTGTTAACCCCAATACTTCTCTTCCTCTTGTTATCAGAGCTCGTGTCTTCATTACTATGATACTGAGTGTTATATACATCTTTAGCCCTATTGACATCATTCCAGAAGGGATATTGGGAATAATTGGTCTGTTGGATGATGTCCTAATTGCACTAATCTTCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTTTACCTCCGTCACGGGGGTTCATGA 576 0.3958 MDSRRMEEEEEEAPPSNDLCSICHGNFQNPCQANCSHWFCANCIMLVWKHSSGIQPCKCPLCRRPINLLVPTNNNNNDDPQTMSEIQTYNRVFGQQSNAPITQRILDLPFLLRRLFRDFVNPNTSLPLVIRARVFITMILSVIYIFSPIDIIPEGILGIIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00041 191 PANTHER UNCHARACTERIZED 7 188 IPR038896 GO:0061630
Trre5g00041 191 Pfam Zinc finger, C3HC4 type (RING finger) 17 67 - -
Trre5g00041 191 CDD RING-HC_RNF113A_B 13 71 - -
Trre5g00041 191 SUPERFAMILY RING/U-box 11 76 - -
Trre5g00041 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Trre5g00041 191 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Trre5g00041 191 Pfam Protein of unknown function (DUF1232) 137 170 IPR010652 -
Trre5g00041 191 ProSiteProfiles Zinc finger RING-type profile. 20 63 IPR001841 -
Trre5g00041 191 SMART ring_2 20 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00041 Trre-Chr5 211472 212941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00041 45 191 C3H Transcription Factor Family AT1G72175 63.158 1.90e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00041 K15707 - thj:104800136 220.32