Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00027 ATGATAGTAGAAAAATGGTTTCATTGTTGCAGCATAAGGTCAACAATTGATAGGTACAAAAAGGCATGTTCAGATCATTCAAGTACCACTACTACTACTGAGATTAATGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGCGACAACAAATACAGATGCTGCAAAACTCTAACAGGCACTTGATGGGTGATGCTTTAAGCACATTGACTGTCAAGGAACTTAAGCAGTTGGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTGCTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAGAATCTTTGTCTTCGGACTAAGATAAATGATGTTGAGAGGCTTCCACAAGTAAACATGGTTTCTGGACAAGAGCTTAATGCAATTCAGGCATTAGCTTCTCGTAATTTCTTTGAACCAAACATGATGGAAGGTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGTAA 519 0.3776 MIVEKWFHCCSIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERLPQVNMVSGQELNAIQALASRNFFEPNMMEGETSYHQSDKKILHLG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00027 172 Coils Coil 74 94 - -
Trre5g00027 172 Pfam K-box region 34 121 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g00027 172 ProSiteProfiles K-box domain profile. 37 127 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g00027 172 Coils Coil 37 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00027 Trre-Chr5 133149 134283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00027 11 172 MADS-box Gene Family AT4G09960 67.059 3.97e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00027 K09264 - gmx:100301905 290.812