Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00026 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATCGAAAGAGAGGTAAGAACGAAGCCGACGACGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGCCAAGAATACGCTCAAGTTCTCCGTATGCTCGGTAACGGTCGATGCGAAGCTATGTGCATCGACGGCACAAAACGTCTCTGTCACATTCGTGGTAAGATGCACAAAAAGGTTTGGATTGCCGCCGGCGATATCATCCTCGTCGGACTCCGTGATTATCAAGATGATAAGGCTGATGTTATCCTTAAATTCATGCCTGATGAGGCTCGTCTTTTGAAAGCTTATGGAAAAAGAGAAAGAATTGAAGGGAGGAACAAAATAAAGAAAGAATTGTTGAGGAATATATATGGTTGCAGTGTGGAATTTGTTCTTTGTATAGAGTATAGACAAGTCATTGGACAGAAATAA 441 0.424 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKFMPDEARLLKAYGKRERIEGRNKIKKELLRNIYGCSVEFVLCIEYRQVIGQK 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00026 146 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Trre5g00026 146 NCBIfam translation initiation factor eIF-1A 14 108 IPR001253 GO:0003743|GO:0006413
Trre5g00026 146 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Trre5g00026 146 SUPERFAMILY Nucleic acid-binding proteins 2 108 IPR012340 -
Trre5g00026 146 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Trre5g00026 146 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Trre5g00026 146 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g00026 146 CDD S1_IF1A 33 107 IPR001253 GO:0003743|GO:0006413
Trre5g00026 146 Gene3D - 2 123 IPR012340 -
Trre5g00026 146 PANTHER EIF-1A 1 108 IPR001253 GO:0003743|GO:0006413
Trre5g00026 146 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00026 Trre-Chr5 130768 132254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00026 1 108 Eukaryotic Initiation Factors Gene Family AT2G04520 95.370 7.87e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00026 K03236 - ming:122061913 207.994