Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00021 ATGGAGGATTCCAAACATTTTATGAAAGCCATACTTCCTTCACCCTTTCATACCAAACAAATAAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCGGCAATGTGGCTAAGATCACTGTTCCCGATGGTCGTCAATGGGACATGGAATTGAAGAAATGTGGCAACGGCGTTTTCCTTTACAATAAATGGCAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAACTCGGAGTTTAATGTTGTTATATATGATGCAACTTCTGTTGAAATTTGCTATCCATTCAAAACTCCAACTACTAATGGAGAATCAAACACAAATTGTCCTAGTCCTAAGAAAAAGGTCAAAAACATGTCTAATTATTCTTCCAAAAGAGCAAAGGATACTGCCAATGAATGCAACCCAAAAAACCCTTCTTTTCGTTCAAGATACATTAAGGCCACACGGAGCGGATATGTGTATGTTCCTCGTGAATTTGCTGCAAAGTATCTGAAGCTAAAGGTTTCATTCAAGCTTCAAAATTCTCAAGGAAAACAGTGGGATGTTTCTTGTATATCGAATGCTAAACGGTCATCATCAATGCGAATAGCGAAGGGCCTTCCTGGATTCGCAAGGGAAAACAATCCGTTAAAGAAACATATTTATGAGTTTCAGCTGATCAAGATGAAGCCTGTTGTTGTGCTACTAGTTACATCATCTCACCTGCATCGCCAGCAAAATTGTGTTCTGTCATTGGCAGAGGAGGAAGTTAGGGAACCCAAGCATTTTAAGAAGGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAAAATTCCAGATAACTTCATAACACTATTTGGTAATGAACTCAACAATGTTGCTAAAGTTACTGTTCCGGATGGTCGTGTATGGGACATAGAACTTAAGAAATGCGGCGAGAATATTGTATATCCTCCTCCATTAAACACAAAGTGCGGACGTCCTAGGAAAAGGTCCAGGGTTGAAATCAATGATGCTGATAATTTACCAAGTGATGAGGATGATGAAGGATCAAAGAACCCTTGTTTTACTACCATCATCAAGCATCAACGTCTGTATATTAATGCTGATTTTGCTAAAAAGTATCTGAAACCAAATGTTGCTGTTAAGCTCCAGAATTGTAATGGAGAGCAATGGGAAGTTTATTGCTTGTCTAATGATTCTCGAAGTTCAGCAATGCGACTGGGGAGAGGATTCGCTGAATTTTTAACGGACAACAATCTGTCAGACGGAGACGGATGCAAGGTTGAGTTGATTAAGAAAATGCCAGTTGTGCTAAAATTAGTCAGAGTTTGA 1353 0.3851 MEDSKHFMKAILPSPFHTKQIRIPDEFITRFGNELGNVAKITVPDGRQWDMELKKCGNGVFLYNKWQEFAEYYSISYGCYLDFKYEGNSEFNVVIYDATSVEICYPFKTPTTNGESNTNCPSPKKKVKNMSNYSSKRAKDTANECNPKNPSFRSRYIKATRSGYVYVPREFAAKYLKLKVSFKLQNSQGKQWDVSCISNAKRSSSMRIAKGLPGFARENNPLKKHIYEFQLIKMKPVVVLLVTSSHLHRQQNCVLSLAEEEVREPKHFKKAILPSPIHAKQIKIPDNFITLFGNELNNVAKVTVPDGRVWDIELKKCGENIVYPPPLNTKCGRPRKRSRVEINDADNLPSDEDDEGSKNPCFTTIIKHQRLYINADFAKKYLKPNVAVKLQNCNGEQWEVYCLSNDSRSSAMRLGRGFAEFLTDNNLSDGDGCKVELIKKMPVVLKLVRV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00021 450 ProSiteProfiles B3 DNA-binding domain profile. 356 450 IPR003340 GO:0003677
Trre5g00021 450 Pfam B3 DNA binding domain 366 441 IPR003340 GO:0003677
Trre5g00021 450 Pfam B3 DNA binding domain 7 97 IPR003340 GO:0003677
Trre5g00021 450 Pfam B3 DNA binding domain 160 233 IPR003340 GO:0003677
Trre5g00021 450 CDD B3_DNA 360 440 IPR003340 GO:0003677
Trre5g00021 450 PANTHER B3 DOMAIN-CONTAINING 261 321 - -
Trre5g00021 450 SUPERFAMILY DNA-binding pseudobarrel domain 357 441 IPR015300 -
Trre5g00021 450 SUPERFAMILY DNA-binding pseudobarrel domain 264 319 IPR015300 -
Trre5g00021 450 Gene3D - 346 450 IPR015300 -
Trre5g00021 450 Gene3D - 130 247 IPR015300 -
Trre5g00021 450 Gene3D - 1 100 IPR015300 -
Trre5g00021 450 Gene3D - 259 325 IPR015300 -
Trre5g00021 450 SUPERFAMILY DNA-binding pseudobarrel domain 146 233 IPR015300 -
Trre5g00021 450 MobiDBLite consensus disorder prediction 334 356 - -
Trre5g00021 450 MobiDBLite consensus disorder prediction 331 356 - -
Trre5g00021 450 CDD B3_DNA 161 241 IPR003340 GO:0003677
Trre5g00021 450 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre5g00021 450 SMART B3_2 156 244 IPR003340 GO:0003677
Trre5g00021 450 SMART B3_2 362 450 IPR003340 GO:0003677
Trre5g00021 450 SMART B3_2 7 99 IPR003340 GO:0003677
Trre5g00021 450 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre5g00021 450 SUPERFAMILY DNA-binding pseudobarrel domain 4 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00021 Trre-Chr5 111051 113700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00021 359 448 B3 DNA Binding Superfamily AT3G18990 31.250 2.49e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g00021 B3 3.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00021 - - tpra:123915429 537.724