Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00020 ATGGAGGATTCCAAACATTTTATGAAAGCCATACTTCCTTCACCCTTTCATACCAAACAAATAAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCGGCAATGTGGCTAAGATCACTGTTCCCGATGGTCGTCAATGGGACATGGAATTGAAGAAATGTGGCAACGGCGTTTTCCTTTACAATAAATGGCAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAACTCGGAGTTTAATGTTGTTATATATGATGCAACTTCTGTTGAAATTTGCTATCCATTCAAAACTCCAACTACTAATGGAGAATCAAACACAAATTGTCCTAGTCCTAAGAAAAAGGTCAAAAACATGTCTAATTATTCTTCCAAAAGAGCAAAGGATACTGCCAATGAATGCAACCCAAAAAACCCTTCTTTTCGTTCAAGATACATTAAGGCCACACGGAGCGGATATGTGTATGTTCCTCGTGAATTTGCTGCAAAGTATCTGAAGCTAAAGGTTTCATTCAAGCTTCAAAATTCTCAAGGAAAACAGTGGGATGTTTCTTGTATATCGAATGCTAAACGGTCATCATCAATGCGAATAGCGAAGGGCCTTCCTGGATTCGCAAGGGAAAACAATCCGTTAAAGAAACATATTTATGAGTTTCAGCTGATCAAGATGAAGCCTGTTGTTGTGCTACTACATCGCCAGCAAAATTGTGTTCTGTCATTGGCAGAGGAGGAAGTTAGGGAACCCAAGCATTTTAAGAAGGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAAAATTCCAGATAACTTCATAACACTATTTGGTAATGAACTCAACAATGTTGCTAAAGTTACTGTTCCGGATGGTCGTGTATGGGACATAGAACTTAAGAAATGCGGCGAGAATATTGTATATCCTCCTCCATTAAACACAAAGTGCGGACGTCCTAGGAAAAGGTCCAGGGTTGAAATCAATGATGCTGATAATTTACCAAGTGATGAGGATGATGAAGGATCAAAGAACCCTTGTTTTACTACCATCATCAAGCATCAACGTCTGTATATTAATGCTGATTTTGCTAAAAAGTATCTGAAACCAAATGTTGCTGTTAAGCTCCAGAATTGTAATGGAGAGCAATGGGAAGTTTATTGCTTGTCTAATGATTCTCGAAGTTCAGCAATGCGACTGGGGAGAGGATTCGCTGAATTTTTAACGGACAACAATCTGTCAGACGGAGACGGATGCAAGGTTGAGTTGATTAAGAAAATGCCAGTTGTGCTAAAATTAGTCAGAGTTTGA 1335 0.3843 MEDSKHFMKAILPSPFHTKQIRIPDEFITRFGNELGNVAKITVPDGRQWDMELKKCGNGVFLYNKWQEFAEYYSISYGCYLDFKYEGNSEFNVVIYDATSVEICYPFKTPTTNGESNTNCPSPKKKVKNMSNYSSKRAKDTANECNPKNPSFRSRYIKATRSGYVYVPREFAAKYLKLKVSFKLQNSQGKQWDVSCISNAKRSSSMRIAKGLPGFARENNPLKKHIYEFQLIKMKPVVVLLHRQQNCVLSLAEEEVREPKHFKKAILPSPIHAKQIKIPDNFITLFGNELNNVAKVTVPDGRVWDIELKKCGENIVYPPPLNTKCGRPRKRSRVEINDADNLPSDEDDEGSKNPCFTTIIKHQRLYINADFAKKYLKPNVAVKLQNCNGEQWEVYCLSNDSRSSAMRLGRGFAEFLTDNNLSDGDGCKVELIKKMPVVLKLVRV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00020 444 MobiDBLite consensus disorder prediction 328 350 - -
Trre5g00020 444 MobiDBLite consensus disorder prediction 325 350 - -
Trre5g00020 444 Gene3D - 340 444 IPR015300 -
Trre5g00020 444 Gene3D - 130 245 IPR015300 -
Trre5g00020 444 SUPERFAMILY DNA-binding pseudobarrel domain 351 435 IPR015300 -
Trre5g00020 444 Pfam B3 DNA binding domain 360 435 IPR003340 GO:0003677
Trre5g00020 444 Pfam B3 DNA binding domain 160 242 IPR003340 GO:0003677
Trre5g00020 444 Pfam B3 DNA binding domain 7 97 IPR003340 GO:0003677
Trre5g00020 444 SUPERFAMILY DNA-binding pseudobarrel domain 258 313 IPR015300 -
Trre5g00020 444 ProSiteProfiles B3 DNA-binding domain profile. 350 444 IPR003340 GO:0003677
Trre5g00020 444 SMART B3_2 356 444 IPR003340 GO:0003677
Trre5g00020 444 SMART B3_2 156 245 IPR003340 GO:0003677
Trre5g00020 444 SMART B3_2 7 99 IPR003340 GO:0003677
Trre5g00020 444 PANTHER B3 DOMAIN-CONTAINING 255 315 - -
Trre5g00020 444 CDD B3_DNA 354 434 IPR003340 GO:0003677
Trre5g00020 444 SUPERFAMILY DNA-binding pseudobarrel domain 146 245 IPR015300 -
Trre5g00020 444 CDD B3_DNA 161 241 IPR003340 GO:0003677
Trre5g00020 444 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre5g00020 444 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre5g00020 444 SUPERFAMILY DNA-binding pseudobarrel domain 4 98 IPR015300 -
Trre5g00020 444 Gene3D - 254 319 IPR015300 -
Trre5g00020 444 Gene3D - 1 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00020 Trre-Chr5 111051 113700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00020 353 442 B3 DNA Binding Superfamily AT3G18990 31.250 2.41e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g00020 B3 3.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00020 - - tpra:123915429 531.946