Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00019 ATGTCTAACTCAGCTTCTAAAAGTGCAGAGGATGCTGCCAATGAATTCAACCCAAAAAACCCTTATTTTCGTTCAAAAATTGCTAAGACAAAAACTGTGAATGTTACTTCTAAATTTGCTCCAAAGTATCTGAAGCCAGATGTTCCTATAAAACTCCAAAATTCTCATGGAGAGCAGTGGGAAGTATTTTGTATATTCTATAACAAATCATTAGGAATACGAATATCGAGGGGATTTCCTAAATTCCAAATGGACAACAATCTGTCTATAGGAGATATTTGTGTGTTTGAGTTGATCAAGAAAGAGCCGGTTGTGCTAAAAGTTACAATGTTTCGCGCAGTTGACTATCGCAATTAA 357 0.3557 MSNSASKSAEDAANEFNPKNPYFRSKIAKTKTVNVTSKFAPKYLKPDVPIKLQNSHGEQWEVFCIFYNKSLGIRISRGFPKFQMDNNLSIGDICVFELIKKEPVVLKVTMFRAVDYRN 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00019 118 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g00019 118 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 114 IPR044837 -
Trre5g00019 118 SUPERFAMILY DNA-binding pseudobarrel domain 18 112 IPR015300 -
Trre5g00019 118 Pfam B3 DNA binding domain 29 113 IPR003340 GO:0003677
Trre5g00019 118 SMART B3_2 22 114 IPR003340 GO:0003677
Trre5g00019 118 ProSiteProfiles B3 DNA-binding domain profile. 50 114 IPR003340 GO:0003677
Trre5g00019 118 CDD B3_DNA 24 112 IPR003340 GO:0003677
Trre5g00019 118 Gene3D - 1 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00019 Trre-Chr5 109869 110311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00019 9 116 REM Transcription Factor Family AT1G49480 39.474 3.87e-17 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g00019 B3 3.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00019 - - mtr:120575755 161.77