Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00009 ATGGAAATTTCAAATAGTTCACCAAACATGAGAAATTATTCTCAGGAACACGGATCATTACCCCCTAAAATCAGTAAATATGAAATAAATGAATCATGTTTAGAAGGATTAATGTCAGAATTAGGCAAAGAGTGCGGAATAAGGCGACATCATCGAACATATTCGGATAGCATGCTATCTGAGCAACAGCAGCAGCAGCAGCAGGAAGTACCTTATTGGTTGAAAGATCTCCTTGATGATGATGATGATGAGCCTGGAGAATCAGAAGAGAAACTGAAGCCTAGTACTAATGTATGCAGCAGCAGCAGCAACAACAGCAGGACTCATAGAAGATCATCAAGTGACTCCTTAGCATACTTACATAATAAAACAATTCTTCAATATTCTCCAGAAAGGAAGGAACAAAATACTATGTATATTGTAGCTGCAGACCAACAACCCTCCTTTCTGCACCAAAATCATCCTAGAACTGATCATTCAAAACGCGGAAAAAGGCATTCAGCTCAACAATACCGGGCGAGGAAAGTTCAATACATTGGAGAACTAGAAAGAAGTATCCAAGCTTTACAGGCAGAAGGATATGAAGTTTCAGCAGAGCTTGAATTTCTTGATCAGCAAAACCTCATATTAGGTATGGAGAATAGGGCCCTCAAACAACGGTTGGACAGTTTATCCCAGGAGCACTTCGTCAAATGTTTGGAGCAGGAAGTGCTTGAGAGAGAAATCACAAGACTTAGAAATCTGTATCAACAACAACAACACAAACAGCAGCAGCAGCAACAACAGCAAAAGCATCATGGTAGGAATCGATCTAAACAACGTCAAGATCTTGATTCATCAATTGCCAAACTTTCTTTGAAGAATAAGGGAACCGAATCATCGCAGAAAGCCAGATAG 897 0.398 MEISNSSPNMRNYSQEHGSLPPKISKYEINESCLEGLMSELGKECGIRRHHRTYSDSMLSEQQQQQQQEVPYWLKDLLDDDDDEPGESEEKLKPSTNVCSSSSNNSRTHRRSSSDSLAYLHNKTILQYSPERKEQNTMYIVAADQQPSFLHQNHPRTDHSKRGKRHSAQQYRARKVQYIGELERSIQALQAEGYEVSAELEFLDQQNLILGMENRALKQRLDSLSQEHFVKCLEQEVLEREITRLRNLYQQQQHKQQQQQQQQKHHGRNRSKQRQDLDSSIAKLSLKNKGTESSQKAR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00009 298 CDD bZIP_plant_RF2 164 207 IPR044759 GO:0003700|GO:0006355
Trre5g00009 298 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 11 152 IPR044797 -
Trre5g00009 298 MobiDBLite consensus disorder prediction 93 116 - -
Trre5g00009 298 Gene3D - 159 213 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 1 19 - -
Trre5g00009 298 SMART brlzneu 155 216 IPR004827 GO:0003700|GO:0006355
Trre5g00009 298 Coils Coil 235 262 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 278 298 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 147 170 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 249 298 - -
Trre5g00009 298 SUPERFAMILY Leucine zipper domain 164 215 IPR046347 GO:0003700|GO:0006355
Trre5g00009 298 MobiDBLite consensus disorder prediction 249 264 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g00009 298 MobiDBLite consensus disorder prediction 77 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00009 Trre-Chr5 55403 57257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00009 163 231 bZIP Transcription Factor Family AT2G42380 52.174 1.12e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00009 - - tpra:123914043 469.929