Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04212 ATGCGCAGCACGACGCACCTCACCTTAAGTGCAAACATAGATTCTCTCCTCAAATTGAAAAACTCTCTTCAAAACACCGACGTTGTGTTATCTTCATGGAACACATCTGCCCCTCCATGTACAGGTGATGATGCAAATTGGTCCGGTGCTCTATGCTACAAAGGACATGTTTGGGGATTCAAACTTGAAAACATGAACCTTAAAGGCAACATCGACGTTGATTCCATCAAGGATTTGCCTTATATCAGAACCCTTAGCCTCATGAACAACCAATTTGATACCCCGTGGCCGGACCTCAACAAACTCTCTGGTCTCAAGACCCTCTACCTATCAAATAATAAATTTTCCGGTGAGATTCCGGCAGACGCGTTTCATGGGATGCAGTGGTTGAAGAAAATTCATCTGTCTAACAACCAGTTCACTGGTCCAATTCCAACTTCCCTTTCTTCACTGCCGAGGCTGATATCGTTGAGGTTGGATGGAAACAGATTCAATGGTCCTATTCCTGAATTTCGCAAACCATTGAAATCATTCAGTGCAGCAAATAATCAATTAGAGGGTGAAATACCTGCATCCCTTAGCAACATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGTGGAGCCCCTTTAGGAGCATGCTTGCCGAAAAAGAAACCATTATCAATAAATGCGAGCCGTATAGTGGTCGTGGTTCTTGTTAGTCTTGCAATGTTTGTGATTGCAGCAGTAATATTATTTGTCCTTATTAGAAGAAGAAAAAAAGCTACACAACAAGAATCAGGAGGAGGAGGTGGAGGAGGAGGAGTTGGTGTAGTTGCCAACCCCTGCAGTAGGGATAGTACTTGTCAAAAGAAAGGATCTTCGTCATCACCTAATGATATTTCAGATGATCAAGGTTCAATAAGATCACGCGGAACCAGCACCGGTAGCAGAAGCATGAGGTTATCCTTTGTGAGGGAAGAAGTATCGGAACAATTTGATTTGCAAGATCTGTTGAGAGCCTCTGCCGAGATATTAGGAAGTGGTTGTTACAGTTCATCCTATAAGGCTGCTCTGTTGACTGGCCCCACCGTTGTCGTAAAAAGATTCAAACAGATGAACAATGTTGACAGGCAAGAGTTTCGAGAACACATGCGAAGACTAGGAAGGTTAAATCATCCTAATCTCCTTCCTCTCGTGGCTTACTACTACAAAAGAGATGAGAAACTCTTCATTACTGACTTTGTTCGCAATGGCAGTTTGGCCATTCGCCTTCACGGATACCAAGCAATAGGACAGGAAAGCCTTGATTGGCCGACGAGGTTGAAGGCTGTGAAAGGTGTAGCAAAAGGCATTGAATATCTGTACAAAGAGATGCCGAATCTGATTGCGCCTCACGGTCATCTTAAATCCTCAAATGTTCTTCTGAGTGAGTCTTTGGATCCTGTACTGACTGACTATGGATTAGTACCTGTAATAAACCAGGATATTGCTCCTGAAATAATGGTTATATACAAGTCACCTGAGTATTTGCAGCAAGGGAGGATCACTAAGAAGACTGATGTGTGGAGTCTTGGGATACTCATTTTGGAAATTATAACCGGAAAGTTTCCTGCTAATTTTATACAAGGGAGTGAGTTGAGTTTGGCGAATTGGGTGGAATCTGTTGAACCGGAAGCGTGGAGTAGTGAGGTGTTTGATAAAGATATGGTGTTAACGAGTAACAGTGAGGGAGAGATGGTCAAGCTTTCGAAGATTGCATTGGCTTGTTGTGATATGGATGTCGATAAGAGATTGGATTTGAAGGAAGCAGTTTCGAGAATTCAAGAGGTACAAGAAGATACTATTAATGAGGATGATATGTATTCTTCTTCTTAA 1863 0.424 MRSTTHLTLSANIDSLLKLKNSLQNTDVVLSSWNTSAPPCTGDDANWSGALCYKGHVWGFKLENMNLKGNIDVDSIKDLPYIRTLSLMNNQFDTPWPDLNKLSGLKTLYLSNNKFSGEIPADAFHGMQWLKKIHLSNNQFTGPIPTSLSSLPRLISLRLDGNRFNGPIPEFRKPLKSFSAANNQLEGEIPASLSNIPASSFSGNEKLCGAPLGACLPKKKPLSINASRIVVVVLVSLAMFVIAAVILFVLIRRRKKATQQESGGGGGGGGVGVVANPCSRDSTCQKKGSSSSPNDISDDQGSIRSRGTSTGSRSMRLSFVREEVSEQFDLQDLLRASAEILGSGCYSSSYKAALLTGPTVVVKRFKQMNNVDRQEFREHMRRLGRLNHPNLLPLVAYYYKRDEKLFITDFVRNGSLAIRLHGYQAIGQESLDWPTRLKAVKGVAKGIEYLYKEMPNLIAPHGHLKSSNVLLSESLDPVLTDYGLVPVINQDIAPEIMVIYKSPEYLQQGRITKKTDVWSLGILILEIITGKFPANFIQGSELSLANWVESVEPEAWSSEVFDKDMVLTSNSEGEMVKLSKIALACCDMDVDKRLDLKEAVSRIQEVQEDTINEDDMYSSS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04212 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 608 IPR046959 -
Trre4g04212 620 ProSiteProfiles Protein kinase domain profile. 335 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04212 620 Gene3D Ribonuclease Inhibitor 175 215 IPR032675 -
Trre4g04212 620 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 73 168 - -
Trre4g04212 620 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Trre4g04212 620 Pfam Leucine rich repeat 104 164 IPR001611 GO:0005515
Trre4g04212 620 FunFam pollen receptor-like kinase 1 304 410 - -
Trre4g04212 620 Gene3D Ribonuclease Inhibitor 10 173 IPR032675 -
Trre4g04212 620 Pfam Leucine rich repeat N-terminal domain 13 52 IPR013210 -
Trre4g04212 620 SUPERFAMILY L domain-like 13 211 - -
Trre4g04212 620 SUPERFAMILY Protein kinase-like (PK-like) 339 606 IPR011009 -
Trre4g04212 620 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Trre4g04212 620 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04212 620 MobiDBLite consensus disorder prediction 281 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04212 Trre-Chr4 51356332 51359004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04212 14 619 Receptor kinase-like Gene Family AT5G35390 50.804 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre4g04212 Pkinase 1.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04212 - - gmx:100785189 786.949