Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04185 ATGGATTCTTTTCCTACTTCATCTTCTTCTCCTACTTCTTCCTTTTCTTCCTCAAGATTAAACATTGAGGATAAAACCTCTATTGGTTATCTTTCAGATGGTCTTATAGTTCGAACACAAGAAAGGAAAAAAGGAGTTCCGTGGACAGAAGAGGAACACAGAAAATTTCTTGTTGGACTTGAGAAACTTGGAAAAGGAGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACCCAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGACTTGCAACCTTGAATAAGAAGAAGAGACGTTCTAGCCTCTTTGACATGGTTGGTAGCGGCAACAAAAACAGTTTCAAATCCAAATGTGAAGCTAATGAGAAGGATGATGCAACTTTGTCACTACTAATAACCTCTCTTCAACAACAAACCAAATCAAGTGATTATAGTATGCAAAAAACTGAAGATGATGAAGAAGCAGCTGAAGATGAAGTTGTGCCTGATTGGCTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATTCAACATCACCTGATCTTGAGTTAACTCTTGCAGTTCCTAAGTCTAATAATAATAAGACCATGGAACAAGATAAAACATCCAAGAGTTCATTTCGTATTGGGCCAATTAGTGTGACTTAA 684 0.367 MDSFPTSSSSPTSSFSSSRLNIEDKTSIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGNKNSFKSKCEANEKDDATLSLLITSLQQQTKSSDYSMQKTEDDEEAAEDEVVPDWLHPLTKSLNMTLVIPNSSNSTSPDLELTLAVPKSNNNKTMEQDKTSKSSFRIGPISVT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04185 227 ProSiteProfiles SANT domain profile. 48 96 IPR017884 -
Trre4g04185 227 Pfam Myb-like DNA-binding domain 47 92 IPR001005 -
Trre4g04185 227 SMART sant 44 94 IPR001005 -
Trre4g04185 227 CDD SANT 47 92 IPR001005 -
Trre4g04185 227 PANTHER TRANSCRIPTION FACTOR KUA1 25 196 - -
Trre4g04185 227 MobiDBLite consensus disorder prediction 144 163 - -
Trre4g04185 227 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 94 IPR006447 GO:0003677
Trre4g04185 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 96 IPR017930 -
Trre4g04185 227 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Trre4g04185 227 Gene3D - 46 98 - -
Trre4g04185 227 MobiDBLite consensus disorder prediction 200 227 - -
Trre4g04185 227 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Trre4g04185 227 FunFam transcription factor MYB1R1 46 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04185 Trre-Chr4 50495274 50497541 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g04185 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04185 - - gmx:778053 221.09